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溶组织内阿米巴磷酸丙糖异构酶的热变性:二聚体解离导致广泛变性。

Thermal unfolding of triosephosphate isomerase from Entamoeba histolytica: dimer dissociation leads to extensive unfolding.

作者信息

Tellez Luis A, Blancas-Mejia Luis M, Carrillo-Nava Ernesto, Mendoza-Hernández Guillermo, Cisneros David A, Fernández-Velasco D Alejandro

机构信息

Laboratorio de Fisicoquímica e Ingeniería de Proteínas, Departamento de Bioquímica, Facultad de Medicina, Universidad Nacional Autónoma de México, Apdo. Postal 70-159, 04510 México, DF.

出版信息

Biochemistry. 2008 Nov 4;47(44):11665-73. doi: 10.1021/bi801360k. Epub 2008 Oct 7.

Abstract

In mesophiles, triosephosphate isomerase (TIM) is an obligated homodimer. We have previously shown that monomeric folding intermediates are common in the chemical unfolding of TIM, where dissociation provides 75% of the overall conformational stability of the dimer. However, analysis of the crystallographic structure shows that, during unfolding, intermonomeric contacts contribute to only 5% of the overall increase in accessible surface area. In this work several methodologies were used to characterize the thermal dissociation and unfolding of the TIM from Entamoeba histolytica (EhTIM) and a monomeric variant obtained by chemical derivatization (mEhTIM). During EhTIM unfolding, sequential transitions corresponding to dimer dissociation into a compact monomeric intermediate followed by unfolding and further aggregation of the intermediate occurred. In the case of mEhTIM, a single transition, analogous to the second transition of EhTIM, was observed. Calorimetric, spectroscopic, hydrodynamic, and functional evidence shows that dimer dissociation is not restricted to localized interface reorganization. Dissociation represents 55% (DeltaH(Diss) = 146.8 kcal mol(-1)) of the total enthalpy change (DeltaH(Tot) = 266 kcal mol(-1)), indicating that this process is linked to substantial unfolding. We propose that, rather than a rigid body process, subunit assembly is best represented by a fly-casting mechanism. In TIM, catalysis is restricted to the dimer; therefore, the interface can be viewed as the final nucleation motif that directs assembly, folding, and function.

摘要

在嗜温菌中,磷酸丙糖异构酶(TIM)是一种 obligate 同型二聚体。我们之前已经表明,单体折叠中间体在 TIM 的化学去折叠过程中很常见,其中解离提供了二聚体整体构象稳定性的 75%。然而,对晶体结构的分析表明,在去折叠过程中,单体间的接触对可及表面积的总体增加仅贡献了 5%。在这项工作中,使用了几种方法来表征溶组织内阿米巴(EhTIM)的 TIM 以及通过化学衍生获得的单体变体(mEhTIM)的热解离和去折叠过程。在 EhTIM 去折叠过程中,发生了一系列转变,先是二聚体解离成紧密的单体中间体,接着是中间体去折叠并进一步聚集。对于 mEhTIM,观察到了一个单一转变,类似于 EhTIM 的第二个转变。量热、光谱、流体动力学和功能证据表明,二聚体解离并不局限于局部界面重组。解离占总焓变(ΔH(Tot) = 266 kcal mol⁻¹)的 55%(ΔH(Diss) = 146.8 kcal mol⁻¹),表明这个过程与大量去折叠有关。我们提出,亚基组装并非刚体过程,最好用抛线钓鱼机制来描述。在 TIM 中,催化作用仅限于二聚体;因此,界面可被视为指导组装、折叠和功能的最终成核基序。

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