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亲水性残基在人碳酸酐酶II催化过程中质子转移中的作用。

Role of hydrophilic residues in proton transfer during catalysis by human carbonic anhydrase II.

作者信息

Zheng Jiayin, Avvaru Balendu Sankara, Tu Chingkuang, McKenna Robert, Silverman David N

机构信息

Department of Pharmacology and Therapeutics, College of Medicine, University of Florida, Gainesville, Florida 32610, USA.

出版信息

Biochemistry. 2008 Nov 18;47(46):12028-36. doi: 10.1021/bi801473w. Epub 2008 Oct 23.

Abstract

Catalysis by the zinc metalloenzyme human carbonic anhydrase II (HCA II) is limited in maximal velocity by proton transfer between His64 and the zinc-bound solvent molecule. Asn62 extends into the active site cavity of HCA II adjacent to His64 and has been shown to be one of several hydrophilic residues participating in a hydrogen-bonded solvent network within the active site. We compared several site-specific mutants of HCA II with replacements at position 62 (Ala, Val, Leu, Thr, and Asp). The efficiency of catalysis in the hydration of CO 2 for the resulting mutants has been characterized by (18)O exchange, and the structures of the mutants have been determined by X-ray crystallography to 1.5-1.7 A resolution. Each of these mutants maintained the ordered water structure observed by X-ray crystallography in the active site cavity of wild-type HCA II; hence, this water structure was not a variable in comparing with wild type the activities of mutants at residue 62. Crystal structures of wild-type and N62T HCA II showed both an inward and outward orientation of the side chain of His64; however, other mutants in this study showed predominantly inward (N62A, N62V, N62L) or predominantly outward (N62D) orientations of His64. A significant role of Asn62 in HCA II is to permit two conformations of the side chain of His64, the inward and outward, that contributes to maximal efficiency of proton transfer between the active site and solution. The site-specific mutant N62D had a mainly outward orientation of His64, yet the difference in p K a between the proton donor His64 and zinc-bound hydroxide was near zero, as in wild-type HCA II. The rate of proton transfer in catalysis by N62D HCA II was 5% that of wild type, showing that His64 mainly in the outward orientation is associated with inefficient proton transfer compared with His64 in wild type which shows both inward and outward orientations. These results emphasize the roles of the residues of the hydrophilic side of the active site cavity in maintaining efficient catalysis by carbonic anhydrase.

摘要

锌金属酶人碳酸酐酶II(HCA II)的催化作用在最大速度上受到组氨酸64(His64)与锌结合的溶剂分子之间质子转移的限制。天冬酰胺62(Asn62)延伸到HCA II的活性位点腔中,与His64相邻,并且已被证明是参与活性位点内氢键溶剂网络的几个亲水性残基之一。我们比较了HCA II的几个位点特异性突变体,这些突变体在第62位进行了替换(丙氨酸、缬氨酸、亮氨酸、苏氨酸和天冬氨酸)。通过(18)O交换表征了所得突变体催化二氧化碳水合作用的效率,并通过X射线晶体学确定了突变体的结构,分辨率为1.5 - 1.7埃。这些突变体中的每一个都保持了野生型HCA II活性位点腔中通过X射线晶体学观察到的有序水结构;因此,在比较野生型与第62位残基突变体的活性时,这种水结构不是一个变量。野生型和N62T HCA II的晶体结构显示His64的侧链既有向内又有向外的取向;然而,本研究中的其他突变体显示His64主要是向内(N62A、N62V、N62L)或主要是向外(N62D)的取向。Asn62在HCA II中的一个重要作用是允许His64侧链有两种构象,即向内和向外,这有助于活性位点与溶液之间质子转移的最大效率。位点特异性突变体N62D的His64主要是向外取向,然而,质子供体His64与锌结合的氢氧化物之间的pKa差异接近零,与野生型HCA II一样。N62D HCA II催化过程中的质子转移速率是野生型的5%,这表明与显示向内和向外取向的野生型His64相比,主要处于向外取向的His64与低效的质子转移相关。这些结果强调了活性位点腔亲水性一侧的残基在维持碳酸酐酶高效催化中的作用。

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