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一种 hCA VII 变体的晶体结构为其催化行为的分子决定因素提供了新见解。

The Crystal Structure of a hCA VII Variant Provides Insights into the Molecular Determinants Responsible for Its Catalytic Behavior.

机构信息

Istituto di Biostrutture e Bioimmagini, CNR, Via Mezzocannone 16, 80134 Napoli, Italy.

Dipartimento Neurofarba, Sezione di Scienze Farmaceutiche e Nutraceutiche, Università degli Studi di Firenze, Via U. Schiff 6, 50019 Florence, Italy.

出版信息

Int J Mol Sci. 2018 May 24;19(6):1571. doi: 10.3390/ijms19061571.

Abstract

Although important progress has been achieved in understanding the catalytic mechanism of Carbonic Anhydrases, a detailed picture of all factors influencing the catalytic efficiency of the various human isoforms is still missing. In this paper we report a detailed structural study and theoretical pKa calculations on a hCA VII variant. The obtained data were compared with those already known for another thoroughly investigated cytosolic isoform, hCA II. Our structural studies show that in hCA VII the network of ordered water molecules, which connects the zinc bound solvent molecule to the proton shuttle His64, is altered compared to hCA II, causing a reduction of the catalytic efficiency. Theoretical calculations suggest that changes in solvent network are related to the difference in pKa of the proton shuttle in the two enzymes. The residue that plays a major role in determining the diverse pKa values of the proton shuttle is the one in position four, namely His for hCA II and Gly for hCA VII. This residue is located on the protein surface, outside of the active site cavity. These findings are in agreement with our previous studies that highlighted the importance of histidines on the protein surface of hCA II (among which His4) as crucial residues for the high catalytic efficiency of this isoform.

摘要

虽然在理解碳酸酐酶的催化机制方面已经取得了重要进展,但对于影响各种人源同工酶催化效率的所有因素的详细情况仍不清楚。本文我们报告了对 hCA VII 变体的详细结构研究和理论 pKa 计算。所得数据与另一种经过深入研究的胞质同工酶 hCA II 的已知数据进行了比较。我们的结构研究表明,与 hCA II 相比,hCA VII 中连接锌结合溶剂分子与质子传递 His64 的有序水分子网络发生了改变,导致催化效率降低。理论计算表明,溶剂网络的变化与两种酶中质子传递体 pKa 的差异有关。在决定质子传递体不同 pKa 值方面起主要作用的残基是位于第 4 位的残基,即 hCA II 中的 His 和 hCA VII 中的 Gly。该残基位于蛋白质表面,在活性位点腔之外。这些发现与我们之前的研究一致,该研究强调了 hCA II 表面组氨酸(其中包括 His4)作为该同工酶高催化效率的关键残基的重要性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/58b2/6032174/5c0fa271491d/ijms-19-01571-g001.jpg

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