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利用多重实时定量 PCR 检测和定量分析对黄萎病反应不同的马铃薯品系中黄萎病菌的定殖。

Multiplex Real-Time Quantitative PCR to Detect and Quantify Verticillium dahliae Colonization in Potato Lines that Differ in Response to Verticillium Wilt.

出版信息

Phytopathology. 2007 Jul;97(7):865-72. doi: 10.1094/PHYTO-97-7-0865.

Abstract

ABSTRACT Potato early dying (PED), also known as Verticillium wilt, caused by Verticillium dahliae, is a seasonal yield-limiting disease of potato worldwide, and PED-resistant cultivars currently represent only a small percentage of potato production. In this study, we developed a real-time quantitative polymerase chain reaction (Q-PCR) approach to detect and quantify V. dahliae. The efficiency of the designed primer pair VertBt-F/VertBt-R, derived from the sequence of the beta-tubulin gene, was greater than 95% in monoplex Q-PCR and duplex (using Plexor technology) procedures with primers PotAct-F/PotAct-R, obtained from the sequence of the actin gene, designed for potato. As few as 148 fg of V. dahliae DNA were detected and quantified, which is equivalent to five nuclei. Q-PCR detected V. dahliae in naturally infected air-dried potato stems and fresh stems of inoculated plants. Spearman correlations indicated a high correlation (upward of 80%) between V. dahliae quantifications using Q-PCR and the currently used plating assays. Moreover, Q-PCR substantially reduced the variability compared with that observed in the plating assay, and allowed for the detection of V. dahliae in 10% of stem samples found to be pathogen free on the culture medium. The described Q-PCR approach should provide breeders with a more sensitive and less variable alternative to time-consuming plating assays to distinguish response of breeding lines to colonization by V. dahliae.

摘要

摘要 马铃薯早死病(PED),又称黄萎病,由轮枝菌(Verticillium dahliae)引起,是一种全球性的马铃薯季节性减产疾病,而目前具有 PED 抗性的品种仅占马铃薯产量的一小部分。在本研究中,我们开发了一种实时定量聚合酶链反应(Q-PCR)方法来检测和定量检测 V. dahliae。从β-微管蛋白基因序列设计的引物对 VertBt-F/VertBt-R 的效率在单重 Q-PCR 和双重(使用 Plexor 技术)程序中均大于 95%,该引物对与从肌动蛋白基因序列设计的引物 PotAct-F/PotAct-R 一起使用,用于马铃薯。检测到的 V. dahliae DNA 低至 148 fg,相当于 5 个细胞核。Q-PCR 检测到自然感染的风干马铃薯茎和接种植物新鲜茎中的 V. dahliae。Spearman 相关性分析表明,Q-PCR 检测到的 V. dahliae 与目前使用的平板检测法之间具有高度相关性(高于 80%)。此外,与平板检测法相比,Q-PCR 大大降低了变异性,并允许在培养基上发现 10%的茎样本为病原体时检测到 V. dahliae。所描述的 Q-PCR 方法应该为育种者提供一种更敏感且变异性更小的替代方法,用于区分育种系对 V. dahliae 定植的反应,而不是耗时的平板检测法。

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