Chang Ho-Won, Roh Seong Woon, Kim Kyoung-Ho, Nam Young-Do, Yoon Jung-Hoon, Oh Hee-Mock, Bae Jin-Woo
Biological Resources Center, KRIBB, Daejeon, Republic of Korea.
Int J Syst Evol Microbiol. 2008 Dec;58(Pt 12):2743-7. doi: 10.1099/ijs.0.65724-0.
A Gram-negative, aerobic, slightly halophilic, rod-shaped bacterium was isolated from black sand in Soesoggak, Jeju island, Korea. The strain, designated J63(T), was oxidase- and catalase-positive and arginine dihydrolase-negative. The isolate required Na(+) for growth and differed from phenotypically related species by being able to utilize sucrose and d-galactose as a carbon source. Phylogenetic analysis based on the sequence of the 16S rRNA gene revealed that strain J63(T) belongs to the genus Marinomonas. It exhibited 16S rRNA gene sequence similarities of 97.6-98.7 % to the closely related species Marinomonas communis, Marinomonas ostreistagni, Marinomonas aquimarina and Marinomonas vaga. The phylogenetic analysis revealed that strain J63(T) comprised a relatively long subline of descent, shared a branch point with the outlying species Marinomonas communis and occupied a phylogenetically distant position on the main Marinomonas branch. Based on DNA-DNA hybridization, the levels of relatedness between strain J63(T) and M. communis NBRC 102224(T), M. aquimarina CIP 108405(T) and M. vaga JCM 20774(T) were 56.2, 45.1 and 51.3 %, respectively. On the basis of the phenotypic, genetic and phylogenetic data, strain J63(T) should be placed in the genus Marinomonas as representing a novel species, for which the name Marinomonas basaltis sp. nov. is proposed. The type strain is J63(T) (=KCTC 22118(T)=JCM 14948(T)).
从韩国济州岛西归浦的黑砂中分离出一株革兰氏阴性、需氧、轻度嗜盐的杆状细菌。该菌株命名为J63(T),氧化酶和过氧化氢酶呈阳性,精氨酸双水解酶呈阴性。该分离株生长需要Na(+),并且能够利用蔗糖和d-半乳糖作为碳源,这与表型相关的物种不同。基于16S rRNA基因序列的系统发育分析表明,菌株J63(T)属于海单胞菌属。它与密切相关的物种海单胞菌(Marinomonas communis)、牡蛎海单胞菌(Marinomonas ostreistagni)、海水海单胞菌(Marinomonas aquimarina)和漂泊海单胞菌(Marinomonas vaga)的16S rRNA基因序列相似性为97.6 - 98.7%。系统发育分析表明,菌株J63(T)构成了一个相对较长的进化分支,与外围物种海单胞菌(Marinomonas communis)共享一个分支点,并在海单胞菌属的主要分支上占据了一个系统发育上较远的位置。基于DNA - DNA杂交分析,菌株J63(T)与海单胞菌(Marinomonas communis)NBRC 102224(T)、海水海单胞菌(Marinomonas aquimarina)CIP 108405(T)和漂泊海单胞菌(Marinomonas vaga)JCM 20774(T)的亲缘关系水平分别为56.2%、45.1%和51.3%。基于表型、遗传和系统发育数据,菌株J63(T)应归入海单胞菌属,代表一个新物种,为此提出名为玄武岩海单胞菌(Marinomonas basaltis sp. nov.)。模式菌株为J63(T)(=KCTC 22118(T)=JCM 14948(T))。