Suppr超能文献

在全基组极限下通过从头算分子动力学得到的液态水的动力学性质。

Dynamical properties of liquid water from ab initio molecular dynamics performed in the complete basis set limit.

作者信息

Lee Hee-Seung, Tuckerman Mark E

机构信息

Department of Chemistry, New York University, New York 10003, USA.

出版信息

J Chem Phys. 2007 Apr 28;126(16):164501. doi: 10.1063/1.2718521.

Abstract

Dynamical properties of liquid water were studied using Car-Parrinello [Phys. Rev. Lett. 55, 2471 (1985)] ab initio molecular dynamics (AIMD) simulations within the Kohn-Sham (KS) density functional theory employing the Becke-Lee-Yang-Parr exchange-correlation functional for the electronic structure. The KS orbitals were expanded in a discrete variable representation basis set, wherein the complete basis set limit can be easily reached and which, therefore, provides complete convergence of ionic forces. In order to minimize possible nonergodic behavior of the simulated water system in a constant energy (NVE) ensemble, a long equilibration run (30 ps) preceded a 60 ps long production run. The temperature drift during the entire 60 ps trajectory was found to be minimal. The diffusion coefficient [0.055 A2/ps] obtained from the present work for 32 D2O molecules is a factor of 4 smaller than the most up to date experimental value, but significantly larger than those of other recent AIMD studies. Adjusting the experimental result so as to match the finite-sized system used in the present study brings the comparison between theory and experiment to within a factor of 3. More importantly, the system is not observed to become "glassy" as has been reported in previous AIMD studies. The computed infrared spectrum is in good agreement with experimental data, especially in the low frequency regime where the translational and librational motions of water are manifested. The long simulation length also made it possible to perform detailed studies of hydrogen bond dynamics. The relaxation dynamics of hydrogen bonds observed in the present AIMD simulation is slower than those of popular force fields, such as the TIP4P potential, but comparable to that of the TIP5P potential.

摘要

利用Car-Parrinello方法[《物理评论快报》55, 2471 (1985)],在Kohn-Sham (KS)密度泛函理论框架下,采用Becke-Lee-Yang-Parr交换关联泛函描述电子结构,开展了液态水动力学性质的从头算分子动力学(AIMD)模拟。KS轨道以离散变量表示基组展开,在此基组中能够轻松达到完备基组极限,从而使离子力完全收敛。为了使模拟水体系在等能(NVE)系综中可能出现的非遍历行为最小化,在60 ps的生产运行之前先进行了30 ps的长时间平衡运行。发现在整个60 ps轨迹中温度漂移极小。本研究中针对32个D2O分子得到的扩散系数[0.055 Å2/ps]比最新的实验值小4倍,但显著大于其他近期AIMD研究中的值。将实验结果进行调整以匹配本研究中使用的有限尺寸体系,使得理论与实验之间的比较误差在3倍以内。更重要的是,未观察到该体系如先前AIMD研究中所报道的那样变成“玻璃态”。计算得到的红外光谱与实验数据吻合良好,特别是在水的平动和摆动运动表现明显的低频区域。长模拟长度还使得对氢键动力学进行详细研究成为可能。在本AIMD模拟中观察到的氢键弛豫动力学比诸如TIP4P势等常用力场的弛豫动力学慢,但与TIP5P势的弛豫动力学相当。

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验