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基于多位点随机扩增多态性DNA标记的变异性对黑龙江鲟(史氏鲟×贝氏鲟、贝氏鲟×史氏鲟、史氏鲟×俄罗斯鲟、俄罗斯鲟×史氏鲟)种间杂种进行分子鉴定及遗传多样性特征分析

[Molecular identification and the features of genetic diversity in interspecific hybrids of Amur sturgeon (Acipenser schrenckii x A. baerii, A. baerii x A. schrenckii, A. schrenckii x A. ruthenus, and A. ruthenus x A. schrenckii) based on variability of multilocus RAPD markers].

作者信息

Rozhkovan K V, Chelomina G N, Rachek E I

出版信息

Genetika. 2008 Nov;44(11):1453-60.

Abstract

The method of polymerase chain reaction with random primers (RAPD PCR) was used to identify the progeny of the crosses between three sturgeon species, Amur sturgeon (Acipenser schrenckii Brandt, 1869), Siberian sturgeon (A. baerii Brandt, 1869), and sterlet (A. ruthenus Linnaeus, 1758). Using ten primers, genetic variation in 70 yearlings, produced in seven individual crosses: Acipenser schrenckii x A. schrenckii, A. baerii x A. baerii, A. ruthenus x A. ruthenus, A. schrenckii x A. baerii, A. baerii x A. schrenckii, A. schrenckii x A. ruthenus, and A. ruthenus x A. schrenckii was described and evaluated. It was demonstrated that the samples composed of hybrids from individual crosses were more variable than the samples of parental species. On the other hand, pooled samples of hybrids from two cross directions were genetically less variable than the pooled samples of their parents. The three main features of the hybrid RAPD profiles identified included: (1) preservation of marker DNA fragments of both parents in one genome; (2) presence of specific DNA fragments, absent from both parents; and (3) dependence of the frequency of some DNA fragments from the cross direction. Multidimensional scaling clearly distinguishes in the space of three coordinates the individuals of original species and the hybrid progeny with differentiation in the groups of direct and backcross hybrids. Analysis of relationships (UPGMA and NJ) pointed to substantial differentiation between the species, as well as between the species and hybrid progeny. Close genetic relationships between direct and backcross hybrids were demonstrated. Multilocus RAPD markers in association with statistical methods are considered to be the useful tool for discrimination of interspecific hybrids of sturgeon. Possible reasons for the differences in the hybrid RAPD profiles are discussed.

摘要

采用随机引物聚合酶链反应(RAPD-PCR)方法鉴定了三种鲟鱼(黑龙江鲟,Acipenser schrenckii Brandt,1869;西伯利亚鲟,A. baerii Brandt,1869;小体鲟,A. ruthenus Linnaeus,1758)杂交后代。使用10种引物,描述并评估了70尾一岁龄鱼的遗传变异情况,这些一岁龄鱼来自7个个体杂交组合:黑龙江鲟×黑龙江鲟、西伯利亚鲟×西伯利亚鲟、小体鲟×小体鲟、黑龙江鲟×西伯利亚鲟、西伯利亚鲟×黑龙江鲟、黑龙江鲟×小体鲟、小体鲟×黑龙江鲟。结果表明,由个体杂交组合产生的杂种样本比亲本物种样本具有更高的变异性。另一方面,来自两个杂交方向的杂种混合样本在遗传上比其亲本的混合样本变异性更低。鉴定出的杂种RAPD图谱的三个主要特征包括:(1)在一个基因组中保留双亲的标记DNA片段;(2)存在双亲均不存在的特异性DNA片段;(3)某些DNA片段的频率取决于杂交方向。多维标度分析在三维坐标空间中清晰地区分了原始物种个体和杂种后代,直接杂交和回交杂种群体之间存在差异。亲缘关系分析(UPGMA和NJ)表明物种之间以及物种与杂种后代之间存在显著差异。直接杂交和回交杂种之间显示出密切的遗传关系。多位点RAPD标记结合统计方法被认为是鉴别鲟鱼种间杂种的有用工具。文中还讨论了杂种RAPD图谱差异的可能原因。

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