Hutter M C
Center for Bioinformatics, Saarland University, Campus Building C7.1, D-66123 Saarbruecken, Germany.
Curr Med Chem. 2009;16(2):189-202. doi: 10.2174/092986709787002736.
Drug design has become inconceivable without the assistance of computer-aided methods. In this context in silico was chosen as designation to emphasize the relationship to in vitro and in vivo testing. Nowadays, virtual screening covers much more than estimation of solubility and oral bioavailability of compounds. Along with the challenge of parsing virtual compound libraries, the necessity to model more specific metabolic and toxicological aspects has emerged. Here, recent developments in prediction models are summarized, covering optimization problems in the fields of cytochrome P450 metabolism, blood-brain-barrier permeability, central nervous system activity, and blockade of the hERG-potassium channel. Aspects arising from the use of homology models and quantum chemical calculations are considered with respect to the biological functions. Furthermore, approaches to distinguish drug-like substances from nondrugs by the means of machine learning algorithms are compared in order to derive guidelines for the design of new agents with appropriate properties.
没有计算机辅助方法的协助,药物设计已变得不可想象。在这种情况下,“in silico”被选作名称,以强调与体外和体内测试的关系。如今,虚拟筛选涵盖的内容远不止化合物溶解度和口服生物利用度的估计。随着解析虚拟化合物库的挑战,对更具体的代谢和毒理学方面进行建模的必要性也随之出现。本文总结了预测模型的最新进展,涵盖细胞色素P450代谢、血脑屏障通透性、中枢神经系统活性以及hERG钾通道阻断等领域的优化问题。考虑了同源性模型和量子化学计算在生物学功能方面的应用。此外,还比较了通过机器学习算法区分类药物物质和非药物物质的方法,以便为设计具有适当性质的新药物提供指导方针。