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福氏志贺菌2a菌株301磷酸乙醇酸磷酸酶的过表达、纯化、表征及初步晶体学研究

Overexpression, purification, characterization and preliminary crystallographic study of phosphoglycolate phosphatase from Shigella flexneri 2a strain 301.

作者信息

Liu Heli, Zhou Huina, Zhu Deyu, Bi Ruchang

机构信息

Institute of Biophysics, Chinese Academy of Sciences, Beijing, People's Republic of China.

出版信息

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2009 Jan 1;65(Pt 1):29-33. doi: 10.1107/S1744309108039067. Epub 2008 Dec 25.

Abstract

Phosphoglycolate phosphatase has a salvage function in the metabolism of the 2-phosphoglycolate formed during bacterial DNA repair. In order to better understand its dimerization behaviour, the influence of metal ions on its activity and its catalytic mechanism at the molecular level, recombinant phosphoglycolate phosphatase from Shigella flexneri was overexpressed, purified, characterized and crystallized by the hanging-drop vapour-diffusion method at 291 K using polyethylene glycol 3500 as a precipitant and zinc acetate as an additive. The crystals belonged to space group R3, with unit-cell parameters a = 88.1, b = 88.1, c = 259.2 A, corresponding to the presence of two molecules in the asymmetric unit. SeMet-labelled protein was also prepared and crystallized for use in phase determination. Initial structure determination using the multiwavelength anomalous dispersion (MAD) method clearly revealed that SfPGPase bears an alpha-helical cap domain that differs from that of a previously reported orthologue.

摘要

磷酸乙醇酸磷酸酶在细菌DNA修复过程中形成的2-磷酸乙醇酸的代谢中具有补救功能。为了更好地了解其二聚化行为、金属离子对其活性的影响及其在分子水平上的催化机制,通过悬滴气相扩散法,以聚乙二醇3500作为沉淀剂、乙酸锌作为添加剂,在291 K下对弗氏志贺氏菌的重组磷酸乙醇酸磷酸酶进行了过量表达、纯化、表征和结晶。晶体属于空间群R3,晶胞参数a = 88.1、b = 88.1、c = 259.2 Å,这表明不对称单元中存在两个分子。还制备了硒代甲硫氨酸标记的蛋白质并进行结晶,用于相位测定。使用多波长反常散射(MAD)方法进行的初步结构测定清楚地表明,SfPGPase具有一个α-螺旋帽结构域,该结构域与先前报道的同源物不同。

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