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[亚洲牛带绦虫苹果酸脱氢酶的信息学分析]

[Informatics analysis of malate dehydrogenase from Taenia saginata asiatica].

作者信息

Huang Jiang, Hu Xu-Chu, Huang Yan, Yu Xin-Bing, Bao Huai-En, Lang Shu-Yuan, Liao Xing-Jiang

机构信息

Department of Parasitology, Guiyang Medical University, Guiyang 550004, China.

出版信息

Zhongguo Ji Sheng Chong Xue Yu Ji Sheng Chong Bing Za Zhi. 2008 Jun 30;26(3):225-7.

Abstract

Tools from bioinformatics websites such as NCBI, ExPaSy were used for the analysis. The malate dehydrogenase full-length gene from Taenia saginata asiatica was 1 212 bp in length, with a coding region of 30-1 028 bp and coding 332 amino acids. It was a complete and full-length gene compared with the homologues in GenBank. The protein showed no transmembrane region, with stable physical-chemical characteristics. Three major linear epitopes located aa95-aa100, aa322-aa327 and aa117-aa122, with certain distance from each other on the surface of spatial structure of malate dehydrogenase (MDH). The last one was the linear epitope of Taenia. This cytosolic malate dehydrogenase gene is a potential antigen for diagnosis.

摘要

使用了来自如NCBI、ExPaSy等生物信息学网站的工具进行分析。亚洲牛带绦虫的苹果酸脱氢酶全长基因长度为1212 bp,编码区为30 - 1028 bp,编码332个氨基酸。与GenBank中的同源物相比,它是一个完整的全长基因。该蛋白质无跨膜区域,具有稳定的理化特性。三个主要线性表位位于苹果酸脱氢酶(MDH)空间结构表面的aa95 - aa100、aa322 - aa327和aa117 - aa122处,彼此之间有一定距离。最后一个是牛带绦虫的线性表位。这种胞质苹果酸脱氢酶基因是一种潜在的诊断抗原。

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