NOBLAST和JAMBLAST:BLAST的新选项以及用于BLAST结果的Java应用程序管理器。
NOBLAST and JAMBLAST: New Options for BLAST and a Java Application Manager for BLAST results.
作者信息
Lagnel Jacques, Tsigenopoulos Costas S, Iliopoulos Ioannis
机构信息
Institute of Marine Biology and Genetics, Hellenic Centre for Marine Research, Heraklion 71003, Crete, Greece.
出版信息
Bioinformatics. 2009 Mar 15;25(6):824-6. doi: 10.1093/bioinformatics/btp067. Epub 2009 Jan 29.
UNLABELLED
NOBLAST (New Options for BLAST) is an open source program that provides a new user-friendly tabular output format for various NCBI BLAST programs (Blastn, Blastp, Blastx, Tblastn, Tblastx, Mega BLAST and Psi BLAST) without any use of a parser and provides E-value correction in case of use of segmented BLAST database. JAMBLAST using the NOBLAST output allows the user to manage, view and filter the BLAST hits using a number of selection criteria.
AVAILABILITY
A distribution package of NOBLAST and JAMBLAST including detailed installation procedure is freely available from http://sourceforge.net/projects/JAMBLAST/ and http://sourceforge.net/projects/NOBLAST.
SUPPLEMENTARY INFORMATION
Supplementary data are available at Bioinformatics online.
未标注
NOBLAST(BLAST的新选项)是一个开源程序,它为各种NCBI BLAST程序(Blastn、Blastp、Blastx、Tblastn、Tblastx、Mega BLAST和Psi BLAST)提供了一种新的用户友好的表格输出格式,无需使用任何解析器,并且在使用分段BLAST数据库时提供E值校正。使用NOBLAST输出的JAMBLAST允许用户使用多种选择标准来管理、查看和筛选BLAST命中结果。
可用性
补充信息
补充数据可在《生物信息学》在线获取。