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氰化物(13C15N -)连接的铁过氧化物酶的顺磁13C和15N核磁共振分析:推动效应而非拉动效应调节化合物I的形成速率。

Paramagnetic 13C and 15N NMR analyses of cyanide- (13C15N-) ligated ferric peroxidases: the push effect, not pull effect, modulates the compound I formation rate.

作者信息

Nonaka Daisuke, Wariishi Hiroyuki, Fujii Hiroshi

机构信息

Faculty of Agriculture, Kyushu University, Hakozaki, Fukuoka 812-8581, Japan.

出版信息

Biochemistry. 2009 Feb 10;48(5):898-905. doi: 10.1021/bi802030a.

Abstract

Paramagnetic (13)C and (15)N NMR spectroscopy of heme-bound cyanide ((13)C(15)N) was utilized to quantitatively distinguish the electron donor effect (the push effect) from the proximal histidine and hydrogen-bonding effect (the pull effect) from the distal amino acid residues in cytochrome c peroxidase (CcP), ascorbate peroxidase (APX), lignin peroxidase (LiP), and manganese peroxidase (MnP). Paramagnetic (13)C NMR signals of heme-bound (13)C(15)N of these peroxidases were observed in a wide range, -3501 ppm (CcP), -3563 ppm (APX), -3823 ppm (MnP), and -3826 ppm (LiP), while paramagnetic (15)N NMR signals of those were detected in a narrow range, 574 ppm (ARP), 605 ppm (CcP), 626 ppm (LiP), and 654 ppm (MnP). Detailed analysis, combined with the previous results for horseradish peroxidase and Arthromyces ramosus peroxidase, indicated that the push effect is quite different among these peroxidases while the pull effect is similar. More importantly, a strong correlation between the (13)C NMR shift (the push effect) and the compound I formation rate was observed, indicating that the push effect causes a variation in the compound I formation rate. Comparison of the (13)C and (15)N NMR results of these peroxidases with their crystal structures suggests that the orientation of the proximal imidazole plane to the heme N-Fe-N axis controls the push effect and the compound I formation rate of peroxidase.

摘要

利用血红素结合氰化物(¹³C¹⁵N)的顺磁¹³C和¹⁵N核磁共振光谱,定量区分细胞色素c过氧化物酶(CcP)、抗坏血酸过氧化物酶(APX)、木质素过氧化物酶(LiP)和锰过氧化物酶(MnP)中近端组氨酸的电子供体效应(推效应)和远端氨基酸残基的氢键效应(拉效应)。在很宽的范围内观察到了这些过氧化物酶的血红素结合¹³C¹⁵N的顺磁¹³C核磁共振信号,分别为-3501 ppm(CcP)、-3563 ppm(APX)、-3823 ppm(MnP)和-3826 ppm(LiP),而它们的顺磁¹⁵N核磁共振信号在较窄的范围内被检测到,分别为574 ppm(ARP)、605 ppm(CcP)、626 ppm(LiP)和654 ppm(MnP)。结合辣根过氧化物酶和分枝状节杆菌过氧化物酶的先前结果进行的详细分析表明,这些过氧化物酶之间的推效应差异很大,而拉效应相似。更重要的是,观察到¹³C核磁共振位移(推效应)与化合物I形成速率之间存在很强的相关性,表明推效应导致化合物I形成速率发生变化。将这些过氧化物酶的¹³C和¹⁵N核磁共振结果与其晶体结构进行比较表明,近端咪唑平面相对于血红素N-Fe-N轴的取向控制着过氧化物酶的推效应和化合物I形成速率。

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