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第二配体相互作用和 C 型细胞色素轴向组氨酸特征的变化与分析。

Variation and analysis of second-sphere interactions and axial histidinate character in c-type cytochromes.

机构信息

Department of Chemistry, University of Rochester, Rochester, New York 14627-0216, USA.

出版信息

Inorg Chem. 2010 Sep 6;49(17):7890-7. doi: 10.1021/ic100899k.

Abstract

The electron-donating properties of the axial His ligand to heme iron in cytochromes c (cyts c) are found to be correlated with the midpoint reduction potential (E(m)) in variants of Hydrogenobacter thermophilus cytochrome c(552) (Ht cyt c(552)) in which mutations have been made in and near the Cys-X-X-Cys-His (CXXCH) heme-binding motif. To probe the strength of the His-Fe(III) interaction, we have measured (13)C nuclear magnetic resonance (NMR) chemical shifts for (13)CN(-) bound to heme iron trans to the axial His in Ht Fe(III) cyt c(552) variants. We observe a linear relationship between these (13)C chemical shifts and E(m), indicating that the His-Fe(III) bond strength correlates with E(m). To probe a conserved hydrogen bonding interaction between the axial His Hdelta1 and the backbone carbonyl of a Pro residue, we measured the pK(a) of the axial His Hdelta1 proton (pK(a(2))), which we propose to relate to the His-Fe(III) interaction, reduction potential, and local electrostatic effects. The observed linear relationship between the axial His (13)Cbeta chemical shift and E(m) is proposed to reflect histidinate (anionic) character of the ligand. A linear relationship also is seen between the average heme methyl (1)H chemical shift and E(m) which may reflect variation in axial His electron-donating properties or in the ruffling distortion of the heme plane. In summary, chemical shifts of the axial His and exogenous CN(-) bound trans to His are shown to be sensitive probes of the His-Fe(III) interaction in variants of Ht cyt c(552) and display trends that correlate with E(m).

摘要

细胞色素 c(cyt c)中轴向 His 配体对血红素铁的供电子性质与热氢杆菌细胞色素 c(552)(Ht cyt c(552))变体的中点还原电位(E(m))相关,其中在 Cys-X-X-Cys-His(CXXCH)血红素结合基序中或附近发生了突变。为了探究 His-Fe(III)相互作用的强度,我们已经测量了(13)CN(-)与 Ht Fe(III)cyt c(552)变体中轴向 His 反位结合的血红素铁的(13)C 核磁共振(NMR)化学位移。我们观察到这些(13)C 化学位移与 E(m)之间存在线性关系,表明 His-Fe(III)键强度与 E(m)相关。为了探究轴向 His Hdelta1 与脯氨酸残基的骨架羰基之间的保守氢键相互作用,我们测量了轴向 His Hdelta1 质子的 pK(a)(pK(a(2))),我们提出这与 His-Fe(III)相互作用、还原电位和局部静电效应有关。观察到的轴向 His(13)Cbeta 化学位移与 E(m)之间的线性关系被提出反映配体的组氨酸化物(阴离子)性质。还观察到轴向 His 平均甲(1)H 化学位移与 E(m)之间的线性关系,这可能反映了轴向 His 供电子性质或血红素平面的皱缩变形的变化。总之,轴向 His 和外源 CN(-)反位结合的化学位移被证明是 Ht cyt c(552)变体中 His-Fe(III)相互作用的敏感探针,并显示出与 E(m)相关的趋势。

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本文引用的文献

2
NMR and DFT investigation of heme ruffling: functional implications for cytochrome c.
J Am Chem Soc. 2010 Jul 21;132(28):9753-63. doi: 10.1021/ja102098p.
3
Titration_DB: storage and analysis of NMR-monitored protein pH titration curves.
Proteins. 2010 Mar;78(4):843-57. doi: 10.1002/prot.22611.
5
An unexpected bonding interaction between d(xy) and axial cyanide mediated by porphyrin deformation.
Chem Commun (Camb). 2009 May 14(18):2526-8. doi: 10.1039/b901116a. Epub 2009 Mar 23.
8
A summary of the measured pK values of the ionizable groups in folded proteins.
Protein Sci. 2009 Jan;18(1):247-51. doi: 10.1002/pro.19.
9
The chemistry and biochemistry of heme c: functional bases for covalent attachment.
Nat Prod Rep. 2008 Dec;25(6):1118-30. doi: 10.1039/b717196j. Epub 2008 Sep 9.
10
Analysis of the electrochemistry of hemes with E(m)s spanning 800 mV.
Proteins. 2009 May 15;75(3):719-34. doi: 10.1002/prot.22282.

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