Institute for Molecular Science, National Institutes of Natural Sciences, Myodaiji, Okazaki 444-8787, Japan.
Biochemistry. 2010 Jan 12;49(1):49-57. doi: 10.1021/bi9017285.
Paramagnetic (13)C and (15)N nuclear magnetic resonance (NMR) spectroscopy of heme-bound cyanide ((13)C(15)N) was applied to 11 cytochrome c peroxidase (CcP) and Coprinus cinereus peroxidase (CIP) mutants to investigate contributions to the push and pull effects of conserved amino acids around heme. The (13)C and (15)N NMR data for the distal His and Arg mutants indicated that distal His is the key amino acid residue creating the strong pull effect and that distal Arg assists. The mutation of distal Trp of CcP to Phe, the amino acid at this position in CIP, changed the push and pull effects so they resembled those of CIP, whereas the mutation of distal Phe of CIP to Trp changed this mutant to become CcP-like. The (13)C NMR shifts for the proximal Asp mutants clearly showed that the proximal Asp-His hydrogen bonding strengthens the push effect. However, even in the absence of a hydrogen bond, the push effect of proximal His in peroxidase is significantly stronger than in globins. Comparison of these NMR data with the compound I formation rate constants and crystal structures of these mutants showed that (1) the base catalysis of the distal His is more critical for rapid compound I formation than its acid catalysis, (2) the primary function of the distal Arg is to maintain the distal heme pocket in favor of rapid compound I formation via hydrogen bonding, and (3) the push effect is the major contributor to the differential rates of compound I formation in wild-type peroxidases.
血红素结合氰化物 ((13)C(15)N) 的顺磁 (13)C 和 (15)N 核磁共振 (NMR) 光谱学被应用于 11 种细胞色素 c 过氧化物酶 (CcP) 和毛栓菌过氧化物酶 (CIP) 的突变体,以研究对血红素周围保守氨基酸的推拉效应的贡献。远侧 His 和 Arg 突变体的 (13)C 和 (15)N NMR 数据表明,远侧 His 是产生强拉效应的关键氨基酸残基,而远侧 Arg 则提供辅助。将 CcP 的远侧 Trp 突变为 CIP 中该位置的氨基酸 Phe,改变了推拉效应,使其类似于 CIP,而 CIP 的远侧 Phe 突变为 Trp 则使该突变体类似于 CcP。近侧 Asp 突变体的 (13)C NMR 位移清楚地表明,近侧 Asp-His 氢键增强了推斥效应。然而,即使没有氢键,过氧化物酶中近侧 His 的推斥效应也明显强于球蛋白。将这些 NMR 数据与这些突变体的化合物 I 形成速率常数和晶体结构进行比较表明:(1) 远侧 His 的碱基催化对于快速形成化合物 I 比其酸催化更为关键;(2) 远侧 Arg 的主要功能是通过氢键维持远侧血红素口袋,有利于快速形成化合物 I;(3) 推斥效应是影响野生型过氧化物酶中化合物 I 形成速率差异的主要因素。