• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

细胞色素 c 过氧化物酶和毛栓菌过氧化物酶变体中推拉效应的顺磁 13C 和 15N NMR 分析:血红素周围高度保守氨基酸的功能作用。

Paramagnetic 13C and 15N NMR analyses of the push and pull effects in cytochrome c peroxidase and Coprinus cinereus peroxidase variants: functional roles of highly conserved amino acids around heme.

机构信息

Institute for Molecular Science, National Institutes of Natural Sciences, Myodaiji, Okazaki 444-8787, Japan.

出版信息

Biochemistry. 2010 Jan 12;49(1):49-57. doi: 10.1021/bi9017285.

DOI:10.1021/bi9017285
PMID:19954239
Abstract

Paramagnetic (13)C and (15)N nuclear magnetic resonance (NMR) spectroscopy of heme-bound cyanide ((13)C(15)N) was applied to 11 cytochrome c peroxidase (CcP) and Coprinus cinereus peroxidase (CIP) mutants to investigate contributions to the push and pull effects of conserved amino acids around heme. The (13)C and (15)N NMR data for the distal His and Arg mutants indicated that distal His is the key amino acid residue creating the strong pull effect and that distal Arg assists. The mutation of distal Trp of CcP to Phe, the amino acid at this position in CIP, changed the push and pull effects so they resembled those of CIP, whereas the mutation of distal Phe of CIP to Trp changed this mutant to become CcP-like. The (13)C NMR shifts for the proximal Asp mutants clearly showed that the proximal Asp-His hydrogen bonding strengthens the push effect. However, even in the absence of a hydrogen bond, the push effect of proximal His in peroxidase is significantly stronger than in globins. Comparison of these NMR data with the compound I formation rate constants and crystal structures of these mutants showed that (1) the base catalysis of the distal His is more critical for rapid compound I formation than its acid catalysis, (2) the primary function of the distal Arg is to maintain the distal heme pocket in favor of rapid compound I formation via hydrogen bonding, and (3) the push effect is the major contributor to the differential rates of compound I formation in wild-type peroxidases.

摘要

血红素结合氰化物 ((13)C(15)N) 的顺磁 (13)C 和 (15)N 核磁共振 (NMR) 光谱学被应用于 11 种细胞色素 c 过氧化物酶 (CcP) 和毛栓菌过氧化物酶 (CIP) 的突变体,以研究对血红素周围保守氨基酸的推拉效应的贡献。远侧 His 和 Arg 突变体的 (13)C 和 (15)N NMR 数据表明,远侧 His 是产生强拉效应的关键氨基酸残基,而远侧 Arg 则提供辅助。将 CcP 的远侧 Trp 突变为 CIP 中该位置的氨基酸 Phe,改变了推拉效应,使其类似于 CIP,而 CIP 的远侧 Phe 突变为 Trp 则使该突变体类似于 CcP。近侧 Asp 突变体的 (13)C NMR 位移清楚地表明,近侧 Asp-His 氢键增强了推斥效应。然而,即使没有氢键,过氧化物酶中近侧 His 的推斥效应也明显强于球蛋白。将这些 NMR 数据与这些突变体的化合物 I 形成速率常数和晶体结构进行比较表明:(1) 远侧 His 的碱基催化对于快速形成化合物 I 比其酸催化更为关键;(2) 远侧 Arg 的主要功能是通过氢键维持远侧血红素口袋,有利于快速形成化合物 I;(3) 推斥效应是影响野生型过氧化物酶中化合物 I 形成速率差异的主要因素。

相似文献

1
Paramagnetic 13C and 15N NMR analyses of the push and pull effects in cytochrome c peroxidase and Coprinus cinereus peroxidase variants: functional roles of highly conserved amino acids around heme.细胞色素 c 过氧化物酶和毛栓菌过氧化物酶变体中推拉效应的顺磁 13C 和 15N NMR 分析:血红素周围高度保守氨基酸的功能作用。
Biochemistry. 2010 Jan 12;49(1):49-57. doi: 10.1021/bi9017285.
2
Paramagnetic 13C and 15N NMR analyses of cyanide- (13C15N-) ligated ferric peroxidases: the push effect, not pull effect, modulates the compound I formation rate.氰化物(13C15N -)连接的铁过氧化物酶的顺磁13C和15N核磁共振分析:推动效应而非拉动效应调节化合物I的形成速率。
Biochemistry. 2009 Feb 10;48(5):898-905. doi: 10.1021/bi802030a.
3
The Asp245-->Asn mutant of Coprinus cinereus peroxidase. Characterization by 1H-NMR spectroscopy and comparison with the wild-type enzyme.灰盖鬼伞过氧化物酶的Asp245→Asn突变体。通过1H-NMR光谱进行表征并与野生型酶进行比较。
Biochemistry. 1996 Nov 12;35(45):14370-80. doi: 10.1021/bi961582t.
4
Versatility of heme coordination demonstrated in a fungal peroxidase. Absorption and resonance Raman studies of Coprinus cinereus peroxidase and the Asp245-->Asn mutant at various pH values.真菌过氧化物酶中血红素配位的多功能性。灰盖鬼伞过氧化物酶及其Asp245→Asn突变体在不同pH值下的吸收和共振拉曼研究。
Biochemistry. 1996 Aug 13;35(32):10576-85. doi: 10.1021/bi9605898.
5
Roles of distal arginine in activity and stability of Coprinus cinereus peroxidase elucidated by kinetic and NMR analysis of the Arg51Gln, -Asn, -Leu, and -Lys mutants.通过对Arg51Gln、-Asn、-Leu和-Lys突变体的动力学和核磁共振分析阐明远端精氨酸在灰盖鬼伞过氧化物酶活性和稳定性中的作用。
J Inorg Biochem. 2007 Feb;101(2):336-47. doi: 10.1016/j.jinorgbio.2006.10.007. Epub 2006 Oct 26.
6
Comparison between catalase-peroxidase and cytochrome c peroxidase. The role of the hydrogen-bond networks for protein stability and catalysis.过氧化氢酶-过氧化物酶与细胞色素c过氧化物酶的比较。氢键网络对蛋白质稳定性和催化作用的作用。
Biochemistry. 2004 May 18;43(19):5792-802. doi: 10.1021/bi035835b.
7
Proton NMR investigation of the heme active site structure of an engineered cytochrome c peroxidase that mimics manganese peroxidase.对一种模拟锰过氧化物酶的工程化细胞色素c过氧化物酶的血红素活性位点结构进行质子核磁共振研究。
Biochemistry. 1999 Jul 13;38(28):9146-57. doi: 10.1021/bi990235r.
8
Role of electrostatics and salt bridges in stabilizing the compound I radical in ascorbate peroxidase.静电作用和盐桥在稳定抗坏血酸过氧化物酶中化合物I自由基方面的作用。
Biochemistry. 2005 Nov 1;44(43):14062-8. doi: 10.1021/bi0507128.
9
Relocation of the distal histidine in cytochrome c peroxidase: properties of CcP(W51H), CcP(W51H/H52W), and CcP(W51H/H52L).细胞色素c过氧化物酶中远端组氨酸的重新定位:细胞色素c过氧化物酶(CcP(W51H))、细胞色素c过氧化物酶(CcP(W51H/H52W))和细胞色素c过氧化物酶(CcP(W51H/H52L))的特性
Biochemistry. 2009 Jun 16;48(23):5417-25. doi: 10.1021/bi9003974.
10
Hydrogen bond network in the distal site of peroxidases: spectroscopic properties of Asn70 --> Asp horseradish peroxidase mutant.过氧化物酶远端位点的氢键网络:天冬酰胺70→天冬氨酸辣根过氧化物酶突变体的光谱性质
Biochemistry. 1997 Aug 12;36(32):9791-8. doi: 10.1021/bi9706172.

引用本文的文献

1
Mechanistic insights into the chemistry of compound I formation in heme peroxidases: quantum chemical investigations of cytochrome peroxidase.对血红素过氧化物酶中化合物I形成化学过程的机理洞察:细胞色素过氧化物酶的量子化学研究
RSC Adv. 2022 May 23;12(24):15543-15554. doi: 10.1039/d2ra01073a. eCollection 2022 May 17.
2
A Noncanonical Tryptophan Analogue Reveals an Active Site Hydrogen Bond Controlling Ferryl Reactivity in a Heme Peroxidase.一种非经典色氨酸类似物揭示了一个控制血红素过氧化物酶中高铁血红素反应活性的活性位点氢键。
JACS Au. 2021 Jul 26;1(7):913-918. doi: 10.1021/jacsau.1c00145. Epub 2021 May 14.
3
Rewiring the "Push-Pull" Catalytic Machinery of a Heme Enzyme Using an Expanded Genetic Code.
利用扩展遗传密码重编血红素酶的“推-拉”催化机制
ACS Catal. 2020 Feb 21;10(4):2735-2746. doi: 10.1021/acscatal.9b05129. Epub 2020 Jan 29.
4
Modulating the cobalt redox potential through imidazole hydrogen bonding interactions in a supramolecular biomimetic protein-cofactor model.通过超分子仿生蛋白质-辅因子模型中的咪唑氢键相互作用调节钴氧化还原电位。
Chem Sci. 2016 Jun 1;7(6):3836-3842. doi: 10.1039/c5sc04396d. Epub 2016 Feb 23.
5
Functional consequences of the creation of an Asp-His-Fe triad in a 3/3 globin.在 3/3 球蛋白中创建 Asp-His-Fe 三联体的功能后果。
Biochemistry. 2011 Nov 8;50(44):9664-80. doi: 10.1021/bi201368u. Epub 2011 Oct 13.