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I类移动内含子形成的一种可能途径。

A likely pathway for formation of mobile group I introns.

作者信息

Bonocora Richard P, Shub David A

机构信息

Department of Biological Sciences, State University of New York at Albany, Albany, NY 12222, USA.

出版信息

Curr Biol. 2009 Feb 10;19(3):223-8. doi: 10.1016/j.cub.2009.01.033.

DOI:10.1016/j.cub.2009.01.033
PMID:19200727
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2856452/
Abstract

Mobile group I introns are RNA splicing elements that have been invaded by endonuclease genes. These endonucleases facilitate intron mobility by a unidirectional, duplicative gene-conversion process known as homing [1]. Survival of the invading endonuclease depends upon its ability to promote intron mobility. Therefore, the endonuclease must either quickly change its cleavage specificity to match the site of intron insertion, or it must already be preadapted to cleave this sequence. Here we show that the group I intron in the DNA polymerase gene of T7-like bacteriophage PhiI is mobile, dependent upon its intronic HNH homing endonuclease gene, I-TslI. We also show that gene 5.3 of phage T3, located adjacent to its intronless DNA polymerase gene, is a homologous homing endonuclease gene whose protein product initiates efficient spread of gene 5.3 into empty sites in related phages. Both of these endonucleases cleave intronless DNA polymerase genes at identical positions. This shared feature between an intronic and free-standing endonuclease is unprecedented. Based on this evidence, we propose that introns and their homing endonucleases evolve separately to target the same highly conserved sequences, uniting afterwards to create a composite mobile element.

摘要

I 组内含子是一类RNA剪接元件,已被内切核酸酶基因入侵。这些内切核酸酶通过一种称为归巢的单向复制基因转换过程促进内含子的移动性[1]。入侵的内切核酸酶的存活取决于其促进内含子移动的能力。因此,内切核酸酶必须要么迅速改变其切割特异性以匹配内含子插入位点,要么它必须已经预先适应切割该序列。在这里,我们表明,T7样噬菌体PhiI的DNA聚合酶基因中的I组内含子是可移动的,依赖于其内含子HNH归巢内切核酸酶基因I-TslI。我们还表明,噬菌体T3的5.3基因位于其无内含子的DNA聚合酶基因附近,是一个同源归巢内切核酸酶基因,其蛋白质产物启动5.3基因向相关噬菌体空位点的有效传播。这两种内切核酸酶都在无内含子的DNA聚合酶基因的相同位置切割。内含子内切核酸酶和独立内切核酸酶之间的这种共同特征是前所未有的。基于这一证据,我们提出内含子及其归巢内切核酸酶分别进化以靶向相同的高度保守序列,随后结合形成一个复合移动元件。

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本文引用的文献

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Phage T4 SegB protein is a homing endonuclease required for the preferred inheritance of T4 tRNA gene region occurring in co-infection with a related phage.噬菌体T4的SegB蛋白是一种归巢内切酶,在与相关噬菌体共感染时,它是T4 tRNA基因区域优先遗传所必需的。
Nucleic Acids Res. 2008 Apr;36(6):2094-105. doi: 10.1093/nar/gkn053. Epub 2008 Feb 16.
2
The restriction fold turns to the dark side: a bacterial homing endonuclease with a PD-(D/E)-XK motif.限制折叠转向黑暗面:一种具有PD-(D/E)-XK基序的细菌归巢内切核酸酶。
EMBO J. 2007 May 2;26(9):2432-42. doi: 10.1038/sj.emboj.7601672. Epub 2007 Apr 5.
3
I-Ssp6803I: the first homing endonuclease from the PD-(D/E)XK superfamily exhibits an unusual mode of DNA recognition.I-Ssp6803I:首个来自PD-(D/E)XK超家族的归巢内切酶展现出一种不同寻常的DNA识别模式。
Bioinformatics. 2007 Mar 1;23(5):527-30. doi: 10.1093/bioinformatics/btm007. Epub 2007 Jan 22.
4
Multiple, non-allelic, intein-coding sequences in eukaryotic RNA polymerase genes.真核生物RNA聚合酶基因中的多个非等位内含肽编码序列。
BMC Biol. 2006 Oct 27;4:38. doi: 10.1186/1741-7007-4-38.
5
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J Mol Biol. 2006 Aug 4;361(1):46-68. doi: 10.1016/j.jmb.2006.05.071. Epub 2006 Jun 16.
6
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The genome of bacteriophage K1F, a T7-like phage that has acquired the ability to replicate on K1 strains of Escherichia coli.噬菌体K1F的基因组,它是一种类似T7的噬菌体,已获得在大肠杆菌K1菌株上复制的能力。
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8
SegH and Hef: two novel homing endonucleases whose genes replace the mobC and mobE genes in several T4-related phages.SegH和Hef:两种新型归巢内切酶,其基因在几种T4相关噬菌体中取代了mobC和mobE基因。
Nucleic Acids Res. 2005 Oct 27;33(19):6203-13. doi: 10.1093/nar/gki932. Print 2005.
9
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10
SegG endonuclease promotes marker exclusion and mediates co-conversion from a distant cleavage site.SegG核酸内切酶促进标记排除并介导从远距离切割位点的共转化。
J Mol Biol. 2003 Nov 14;334(1):13-23. doi: 10.1016/j.jmb.2003.09.027.