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Structural and mechanistic analysis of trichodiene synthase using site-directed mutagenesis: probing the catalytic function of tyrosine-295 and the asparagine-225/serine-229/glutamate-233-Mg2+B motif.利用定点诱变对曲霉菌烯合酶进行结构和机理分析:探究酪氨酸-295以及天冬酰胺-225/丝氨酸-229/谷氨酸-233-Mg2+B模体的催化功能
Arch Biochem Biophys. 2008 Jan 15;469(2):184-94. doi: 10.1016/j.abb.2007.10.015. Epub 2007 Oct 30.
2
Rational conversion of substrate and product specificity in a Salvia monoterpene synthase: structural insights into the evolution of terpene synthase function.丹参单萜合酶中底物与产物特异性的合理转变:萜类合酶功能进化的结构解析
Plant Cell. 2007 Jun;19(6):1994-2005. doi: 10.1105/tpc.106.047779. Epub 2007 Jun 8.
3
A modular approach for facile biosynthesis of labdane-related diterpenes.一种用于轻松生物合成半日花烷型二萜的模块化方法。
J Am Chem Soc. 2007 May 30;129(21):6684-5. doi: 10.1021/ja071158n. Epub 2007 May 5.
4
Structure of limonene synthase, a simple model for terpenoid cyclase catalysis.柠檬烯合酶的结构,萜类环化酶催化作用的一个简单模型。
Proc Natl Acad Sci U S A. 2007 Mar 27;104(13):5360-5. doi: 10.1073/pnas.0700915104. Epub 2007 Mar 19.
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Functional characterization of the rice kaurene synthase-like gene family.水稻贝壳杉烯合酶类似基因家族的功能特性分析
Phytochemistry. 2007 Feb;68(3):312-26. doi: 10.1016/j.phytochem.2006.10.016. Epub 2006 Dec 1.
6
Structural biology and chemistry of the terpenoid cyclases.萜类环化酶的结构生物学与化学
Chem Rev. 2006 Aug;106(8):3412-42. doi: 10.1021/cr050286w.
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Functional characterization of nine Norway Spruce TPS genes and evolution of gymnosperm terpene synthases of the TPS-d subfamily.九种挪威云杉TPS基因的功能表征及裸子植物TPS-d亚家族萜烯合酶的进化
Plant Physiol. 2004 Aug;135(4):1908-27. doi: 10.1104/pp.104.042028. Epub 2004 Aug 13.
8
Aristolochene synthase: mechanistic analysis of active site residues by site-directed mutagenesis.马兜铃烯合酶:通过定点诱变对活性位点残基进行机制分析
J Am Chem Soc. 2004 Jun 16;126(23):7212-21. doi: 10.1021/ja0499593.
9
Bifunctional abietadiene synthase: mutual structural dependence of the active sites for protonation-initiated and ionization-initiated cyclizations.双功能枞二烯合酶:质子引发环化和离子化引发环化的活性位点之间的相互结构依赖性
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Bornyl diphosphate synthase: structure and strategy for carbocation manipulation by a terpenoid cyclase.龙脑二磷酸合酶:萜类环化酶对碳正离子操纵的结构与策略
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研究植物中一种假定的第二类萜烯合酶二价金属结合基序的保守模式。

Investigating the conservation pattern of a putative second terpene synthase divalent metal binding motif in plants.

作者信息

Zhou Ke, Peters Reuben J

机构信息

Department of Biochemistry, Biophysics, and Molecular Biology, Iowa State University, Ames, Molecular Biology Building, Rm. 4216, Ames, IA 50011, United States.

出版信息

Phytochemistry. 2009 Feb;70(3):366-9. doi: 10.1016/j.phytochem.2008.12.022. Epub 2009 Feb 7.

DOI:10.1016/j.phytochem.2008.12.022
PMID:19201430
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2682547/
Abstract

Terpene synthases (TPS) require divalent metal ion co-factors, typically magnesium, that are bound by a canonical DDXXD motif, as well as a putative second, seemingly less well conserved and understood (N/D)DXX(S/T)XXXE motif. Given the role of the Ser/Thr side chain hydroxyl group in ligating one of the three catalytically requisite divalent metal ions and the loss of catalytic activity upon substitution with Ala, it is surprising that Gly is frequently found in this 'middle' position of the putative second divalent metal binding motif in plant TPS. Herein we report mutational investigation of this discrepancy in a model plant diterpene cyclase, abietadiene synthase from Abies grandis (AgAS). Substitution of the corresponding Thr in AgAS with Ser or Gly decreased catalytic activity much less than substitution with Ala. We speculate that the ability of Gly to partially restore activity relative to Ala substitution for Ser/Thr stems from the associated reduction in steric volume enabling a water molecule to substitute for the hydroxyl group from Ser/Thr, potentially in a divalent metal ion coordination sphere. In any case, our results are consistent with the observed conservation pattern for this putative second divalent metal ion binding motif in plant TPS.

摘要

萜类合酶(TPS)需要二价金属离子辅因子,通常为镁离子,其由一个典型的DDXXD基序结合,以及一个假定的第二个、似乎保守性和理解程度较低的(N/D)DXX(S/T)XXXE基序。鉴于丝氨酸/苏氨酸侧链羟基在连接三个催化必需的二价金属离子之一中的作用,以及用丙氨酸替代后催化活性的丧失,令人惊讶的是,在植物TPS假定的第二个二价金属结合基序的这个“中间”位置经常发现甘氨酸。在此,我们报告了对一种模式植物二萜环化酶——来自大冷杉的枞二烯合酶(AgAS)中这种差异的突变研究。将AgAS中相应的苏氨酸替换为丝氨酸或甘氨酸,催化活性的降低远小于用丙氨酸替换。我们推测,相对于用丙氨酸替换丝氨酸/苏氨酸,甘氨酸能够部分恢复活性的能力源于空间体积的相关减小,使得水分子能够替代丝氨酸/苏氨酸的羟基,这可能发生在二价金属离子配位球中。无论如何,我们的结果与在植物TPS中观察到的这个假定的第二个二价金属离子结合基序的保守模式一致。