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萜类化合物在海洋海绵动物中的生物合成。

Terpene biosynthesis in marine sponge animals.

机构信息

Scripps Institution of Oceanography, University of California, San Diego, La Jolla, CA 92093.

School of Chemical Sciences, University of Auckland, Auckland 1142, New Zealand.

出版信息

Proc Natl Acad Sci U S A. 2023 Feb 28;120(9):e2220934120. doi: 10.1073/pnas.2220934120. Epub 2023 Feb 21.

Abstract

Sea sponges are the largest marine source of small-molecule natural products described to date. Sponge-derived molecules, such as the chemotherapeutic eribulin, the calcium-channel blocker manoalide, and antimalarial compound kalihinol A, are renowned for their impressive medicinal, chemical, and biological properties. Sponges contain microbiomes that control the production of many natural products isolated from these marine invertebrates. In fact, all genomic studies to date investigating the metabolic origins of sponge-derived small molecules concluded that microbes-not the sponge animal host-are the biosynthetic producers. However, early cell-sorting studies suggested the sponge animal host may play a role particularly in the production of terpenoid molecules. To investigate the genetic underpinnings of sponge terpenoid biosynthesis, we sequenced the metagenome and transcriptome of an isonitrile sesquiterpenoid-containing sponge of the order Bubarida. Using bioinformatic searches and biochemical validation, we identified a group of type I terpene synthases (TSs) from this sponge and multiple other species, the first of this enzyme class characterized from the sponge holobiome. The Bubarida TS-associated contigs consist of intron-containing genes homologous to sponge genes and feature GC percentage and coverage consistent with other eukaryotic sequences. We identified and characterized TS homologs from five different sponge species isolated from geographically distant locations, thereby suggesting a broad distribution amongst sponges. This work sheds light on the role of sponges in secondary metabolite production and speaks to the possibility that other sponge-specific molecules originate from the animal host.

摘要

海绵是迄今为止描述的小分子天然产物的最大海洋来源。海绵衍生的分子,如化疗药物埃博霉素、钙通道阻滞剂 manoalide 和抗疟化合物 kalihinol A,以其令人印象深刻的药用、化学和生物学特性而闻名。海绵含有微生物组,这些微生物组控制着从这些海洋无脊椎动物中分离出来的许多天然产物的产生。事实上,迄今为止所有研究海绵衍生小分子代谢起源的基因组研究都得出结论,微生物——而不是海绵动物宿主——是生物合成的生产者。然而,早期的细胞分选研究表明,海绵动物宿主可能特别在萜类分子的产生中发挥作用。为了研究海绵萜类生物合成的遗传基础,我们对一个含有异腈倍半萜的泡海绵目海绵的宏基因组和转录组进行了测序。通过生物信息学搜索和生化验证,我们从这种海绵和其他多个物种中鉴定出了一组 I 型萜烯合酶 (TS),这是该酶类首次从海绵全生物群中得到表征。Bubarida TS 相关的重叠群包含内含子的基因,与海绵基因同源,其 GC 百分比和覆盖度与其他真核序列一致。我们从五个不同的海绵物种中鉴定并表征了 TS 同源物,这些海绵物种来自地理位置遥远的地方,因此表明它们在海绵中广泛分布。这项工作揭示了海绵在次生代谢产物生产中的作用,并表明其他海绵特异性分子可能来自动物宿主。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/45c6/9992776/50ed89393e3e/pnas.2220934120fig01.jpg

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