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位于5号染色体5q31区域IBD5位点上的IGR2096a_1 T和IGR2198a_1 C等位基因增加匈牙利患者患克罗恩病的风险。

IGR2096a_1 T and IGR2198a_1 C alleles on IBD5 locus of chromosome 5q31 region confer risk for Crohn's disease in Hungarian patients.

作者信息

Lakner Lilla, Csöngei Veronika, Sarlós Patrícia, Járomi Luca, Sáfrány Eniko, Varga Márta, Orosz Péter, Magyari Lili, Bene Judit, Miheller Pál, Tulassay Zsolt, Melegh Béla

机构信息

Department of Medicine and Gastroenterology, Markusovszky Hospital, Szombathely, Hungary.

出版信息

Int J Colorectal Dis. 2009 May;24(5):503-7. doi: 10.1007/s00384-009-0670-x. Epub 2009 Feb 13.

DOI:10.1007/s00384-009-0670-x
PMID:19214536
Abstract

BACKGROUND AND AIMS

We investigated the possible association of IBD with C1672T of SLC22A4 and G-207C of SLC22A5 alleles, and with the novel IGR2096a_1 (rs12521868) and IGR2198a_1 (rs11739135) susceptibility loci, all located on IBD5 locus of chromosome 5q31.

MATERIALS AND METHODS

DNA of 217 Crohn's disease, 252 ulcerative colitis, and 290 control patients were analyzed by polymerase chain reaction/restriction fragment length polymorphism methods.

RESULTS

Neither the C1672T and G-207C alleles, nor the TC haplotype were found to be risk factors. By contrast, the minor allele frequencies of IGR2096a_1 T (47.2%) and IGR2198a_1 C (45.9%) were increased in Crohn's disease compared with the controls (38.2% and 37.7%, respectively; p < 0.05); multivariate regression analysis revealed a risk nature for Crohn's disease (OR = 1.748, 95% CI 1.186-2.574; p = 0.007 for T allele, OR = 1.646, 95% CI 1.119-2.423, p = 0.011 for C allele of IGRs).

CONCLUSION

The data suggest a special haplotype arrangement of susceptibility genes at the IBD5 locus in Hungarians, which nation differs historically from the surrounding Caucasian ethnicities in its origin.

摘要

背景与目的

我们研究了炎症性肠病(IBD)与溶质载体家族22成员4(SLC22A4)基因的C1672T、溶质载体家族22成员5(SLC22A5)基因的G - 207C等位基因,以及与新发现的位于5号染色体5q31的IBD5区域的IGR2096a_1(rs12521868)和IGR2198a_1(rs11739135)易感位点之间可能存在的关联。

材料与方法

采用聚合酶链反应/限制性片段长度多态性方法分析了217例克罗恩病患者、252例溃疡性结肠炎患者及290例对照患者的DNA。

结果

未发现C1672T和G - 207C等位基因以及TC单倍型是危险因素。相比之下,与对照组(分别为38.2%和37.7%)相比,克罗恩病患者中IGR2096a_1 T(47.2%)和IGR2198a_1 C(45.9%)的次要等位基因频率升高(p < 0.05);多因素回归分析显示这些等位基因对克罗恩病具有风险性质(对于IGR2096a_1的T等位基因,OR = 1.748,95% CI为1.186 - 2.574;p = 0.007;对于IGR2198a_1的C等位基因,OR = 1.646,95% CI为1.119 - 2.423,p = 0.011)。

结论

数据表明匈牙利人群中IBD5区域的易感基因存在特殊的单倍型排列,匈牙利在历史起源上与周边白种人不同。

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本文引用的文献

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Population-based controlled study of social support, self-perceived stress, activity and work issues, and access to health care in inflammatory bowel disease.基于人群的炎症性肠病社会支持、自我感知压力、活动与工作问题以及医疗保健可及性的对照研究。
Inflamm Bowel Dis. 2008 Apr;14(4):526-35. doi: 10.1002/ibd.20353.
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Review article: Inflammatory bowel disease and genetics.综述文章:炎症性肠病与遗传学
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Smoking in inflammatory bowel diseases: good, bad or ugly?
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Haplotype in the IBD5 region is associated with refractory Crohn's disease in Slovenian patients and modulates expression of the SLC22A5 gene.IBD5 区域的单体型与斯洛文尼亚患者的难治性克罗恩病相关,并调节 SLC22A5 基因的表达。
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Interaction between CTLA4 gene and IBD5 locus in Hungarian Crohn's disease patients.匈牙利克罗恩病患者 CTLA4 基因与 IBD5 基因座的相互作用。
Int J Colorectal Dis. 2011 Sep;26(9):1119-25. doi: 10.1007/s00384-011-1202-z. Epub 2011 Apr 26.
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Contribution of the IBD5 locus to inflammatory bowel disease: a meta-analysis.IBD5 基因座对炎症性肠病的贡献:一项荟萃分析。
Hum Genet. 2011 Jun;129(6):597-609. doi: 10.1007/s00439-011-0952-6. Epub 2011 Jan 30.
7
Interaction of Crohn's disease susceptibility genes in an Australian paediatric cohort.澳大利亚儿科队列中克罗恩病易感性基因的相互作用。
PLoS One. 2010 Nov 8;5(11):e15376. doi: 10.1371/journal.pone.0015376.
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