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一个适应于共生细菌蚜虫内共生菌合作的脆弱代谢网络。

A fragile metabolic network adapted for cooperation in the symbiotic bacterium Buchnera aphidicola.

作者信息

Thomas Gavin H, Zucker Jeremy, Macdonald Sandy J, Sorokin Anatoly, Goryanin Igor, Douglas Angela E

机构信息

Department of Biology, University of York, PO Box 373, York, YO10 5YW, UK.

出版信息

BMC Syst Biol. 2009 Feb 21;3:24. doi: 10.1186/1752-0509-3-24.

DOI:10.1186/1752-0509-3-24
PMID:19232131
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2649895/
Abstract

BACKGROUND

In silico analyses provide valuable insight into the biology of obligately intracellular pathogens and symbionts with small genomes. There is a particular opportunity to apply systems-level tools developed for the model bacterium Escherichia coli to study the evolution and function of symbiotic bacteria which are metabolically specialised to overproduce specific nutrients for their host and, remarkably, have a gene complement that is a subset of the E. coli genome.

RESULTS

We have reconstructed and analysed the metabolic network of the gamma-proteobacterium Buchnera aphidicola (symbiont of the pea aphid) as a model for using systems-level approaches to discover key traits of symbionts with small genomes. The metabolic network is extremely fragile with > 90% of the reactions essential for viability in silico; and it is structured so that the bacterium cannot grow without producing the essential amino acid, histidine, which is released to the insect host. Further, the amount of essential amino acid produced by the bacterium in silico can be controlled by host supply of carbon and nitrogen substrates.

CONCLUSION

This systems-level analysis predicts that the fragility of the bacterial metabolic network renders the symbiotic bacterium intolerant of drastic environmental fluctuations, whilst the coupling of histidine production to growth prevents the bacterium from exploiting host nutrients without reciprocating. These metabolic traits underpin the sustained nutritional contribution of B. aphidicola to the host and, together with the impact of host-derived substrates on the profile of nutrients released from the bacteria, point to a dominant role of the host in controlling the symbiosis.

摘要

背景

计算机模拟分析为深入了解基因组较小的专性细胞内病原体和共生体的生物学特性提供了有价值的见解。利用为模式细菌大肠杆菌开发的系统水平工具来研究共生细菌的进化和功能,存在着特别的机遇。这些共生细菌在代谢上专门为其宿主过量生产特定营养物质,并且其基因互补体是大肠杆菌基因组的一个子集。

结果

我们重建并分析了γ-变形菌蚜虫内共生菌(豌豆蚜虫的共生体)的代谢网络,以此作为使用系统水平方法来发现基因组较小的共生体关键特征的模型。该代谢网络极其脆弱,在计算机模拟中超过90%的反应对于生存能力至关重要;并且其结构使得细菌如果不产生释放到昆虫宿主中的必需氨基酸组氨酸就无法生长。此外,计算机模拟中细菌产生的必需氨基酸量可由宿主提供的碳和氮底物来控制。

结论

这种系统水平分析预测,细菌代谢网络的脆弱性使得共生细菌无法耐受剧烈的环境波动,而组氨酸产生与生长的耦合阻止了细菌在没有回报的情况下利用宿主营养物质。这些代谢特征支撑了蚜虫内共生菌对宿主持续的营养贡献,并且连同宿主衍生底物对细菌释放的营养物质谱的影响,表明宿主在控制共生关系中起主导作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3bb8/2649895/b20bedc7ffb5/1752-0509-3-24-3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3bb8/2649895/f1591e63c263/1752-0509-3-24-1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3bb8/2649895/e89707165eab/1752-0509-3-24-2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3bb8/2649895/b20bedc7ffb5/1752-0509-3-24-3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3bb8/2649895/f1591e63c263/1752-0509-3-24-1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3bb8/2649895/e89707165eab/1752-0509-3-24-2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3bb8/2649895/b20bedc7ffb5/1752-0509-3-24-3.jpg

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