Boavida Leonor C, Shuai Bin, Yu Hee-Ju, Pagnussat Gabriela C, Sundaresan Venkatesan, McCormick Sheila
Plant Gene Expression Center and Plant and Microbial Biology, US Department of Agriculture/Agricultural Research Service, Albany, California 94710, USA.
Genetics. 2009 Apr;181(4):1369-85. doi: 10.1534/genetics.108.090852. Epub 2009 Feb 23.
Functional analyses of the Arabidopsis genome require analysis of the gametophytic generation, since approximately 10% of the genes are expressed in the male gametophyte and approximately 9% in the female gametophyte. Here we describe the genetic and molecular characterization of 67 Ds insertion lines that show reduced transmission through the male gametophyte. About half of these mutations are male gametophytic-specific mutations, while the others also affect female transmission. Genomic sequences flanking both sides of the Ds element were recovered for 39 lines; for 16 the Ds elements were inserted in or close to coding regions, while 7 were located in intergenic/unannotated regions of the genome. For the remaining 16 lines, chromosomal rearrangements such as translocations or deletions, ranging between 30 and 500 kb, were associated with the transposition event. The mutants were classified into five groups according to the developmental processes affected; these ranged from defects in early stages of gametogenesis to later defects affecting pollen germination, pollen tube growth, polarity or guidance, or pollen tube-embryo sac interactions or fertilization. The isolated mutants carry Ds insertions in genes with diverse biological functions and potentially specify new functions for several unannotated or unknown proteins.
对拟南芥基因组进行功能分析需要对配子体世代进行分析,因为约10%的基因在雄配子体中表达,约9%在雌配子体中表达。本文我们描述了67个Ds插入系的遗传和分子特征,这些插入系通过雄配子体的传递率降低。这些突变中约一半是雄配子体特异性突变,而其他突变也影响雌配子体的传递。对39个品系回收了Ds元件两侧的基因组序列;其中16个品系的Ds元件插入到编码区或其附近,7个位于基因组的基因间/未注释区域。对于其余16个品系,30至500 kb范围内的染色体重排如易位或缺失与转座事件相关。根据受影响的发育过程,将这些突变体分为五组;这些过程从配子发生早期的缺陷到影响花粉萌发、花粉管生长、极性或导向,或花粉管-胚囊相互作用或受精的后期缺陷不等。分离得到的突变体在具有不同生物学功能的基因中携带Ds插入,并且可能为几种未注释或未知的蛋白质确定新功能。