Chavelas Eneas A, García-Hernández Enrique
Instituto de Química, Universidad Nacional Autónoma de México, Ciudad Universitaria, México, DF, Mexico.
Biochem J. 2009 May 13;420(2):239-47. doi: 10.1042/BJ20082171.
Carbohydrates are crucial for living cells, playing myriads of functional roles that range from being structural or energy-storage devices to molecular labels that, through non-covalent interaction with proteins, impart exquisite selectivity in processes such as molecular trafficking and cellular recognition. The molecular bases that govern the recognition between carbohydrates and proteins have not been fully understood yet. In the present study, we have obtained a surface-area-based model for the formation heat capacity of protein-carbohydrate complexes, which includes separate terms for the contributions of the two molecular types. The carbohydrate model, which was calibrated using carbohydrate dissolution data, indicates that the heat capacity contribution of a given group surface depends on its position in the saccharide molecule, a picture that is consistent with previous experimental and theoretical studies showing that the high abundance of hydroxy groups in carbohydrates yields particular solvation properties. This model was used to estimate the carbohydrate's contribution in the formation of a protein-carbohydrate complex, which in turn was used to obtain the heat capacity change associated with the protein's binding site. The model is able to account for protein-carbohydrate complexes that cannot be explained using a previous model that only considered the overall contribution of polar and apolar groups, while allowing a more detailed dissection of the elementary contributions that give rise to the formation heat capacity effects of these adducts.
碳水化合物对活细胞至关重要,发挥着无数功能作用,从作为结构或能量储存装置到作为分子标签,通过与蛋白质的非共价相互作用,在分子运输和细胞识别等过程中赋予精确的选择性。然而,碳水化合物与蛋白质之间识别的分子基础尚未完全被理解。在本研究中,我们获得了基于表面积的蛋白质 - 碳水化合物复合物形成热容量模型,该模型包括两种分子类型贡献的单独项。使用碳水化合物溶解数据校准的碳水化合物模型表明,给定基团表面的热容量贡献取决于其在糖分子中的位置,这一情况与先前的实验和理论研究一致,这些研究表明碳水化合物中羟基的高丰度产生了特定的溶剂化性质。该模型用于估计碳水化合物在蛋白质 - 碳水化合物复合物形成中的贡献,进而用于获得与蛋白质结合位点相关的热容量变化。该模型能够解释使用先前仅考虑极性和非极性基团总体贡献的模型无法解释的蛋白质 - 碳水化合物复合物,同时允许更详细地剖析导致这些加合物形成热容量效应的基本贡献。