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基于虚拟筛选的醛糖还原酶抑制剂的结构优化

Structure-based optimization of aldose reductase inhibitors originating from virtual screening.

作者信息

Eisenmann Michael, Steuber Holger, Zentgraf Matthias, Altenkämper Mirko, Ortmann Regina, Perruchon Johann, Klebe Gerhard, Schlitzer Martin

机构信息

Institut für Pharmazeutische Chemie, Philipps Universität Marburg, Marbacher Weg 6, 35032 Marburg, Germany.

出版信息

ChemMedChem. 2009 May;4(5):809-19. doi: 10.1002/cmdc.200800410.

DOI:10.1002/cmdc.200800410
PMID:19301313
Abstract

Diabetes mellitus is a universal health problem. The World Health Organization (WHO) estimates that 150 million people suffer from diabetes mellitus worldwide in 2005. Long-term complications are a serious problem in the treatment of diabetes, manifesting in macrovascular and microvascular complications. Sorbitol accumulation has been proposed to be an important factor in the development of microvascular complications such as nephropathy, neuropathy, retinopathy or cataract. Catalyzing the NADPH-dependent reduction of glucose to sorbitol, aldose reductase (ALR2) is an important target in the prevention of these complications. The development of novel aldose reductase inhibitors is expected to benefit strongly from a structure-based design approach. A virtual screening based on the ultrahigh-resolution crystal structure of the inhibitor IDD 594 in complex with human ALR2 identified two compounds with IC(50) values in the low micro- to submicromolar range. Based on the known interactions between the ligands and their binding pocket, we simplified the lead structures to give the minimal structural requirements and developed synthetic pathways from commercially available compounds. The newly synthesized compounds were assayed for their inhibition of ALR2, showing inhibitory activities down to the nanomolar range. Crystal structure analysis of the most potent derivative of our series revealed insights into the binding mode of the inhibitors.

摘要

糖尿病是一个全球性的健康问题。世界卫生组织(WHO)估计,2005年全球有1.5亿人患有糖尿病。长期并发症是糖尿病治疗中的一个严重问题,表现为大血管和微血管并发症。山梨醇积累被认为是肾病、神经病变、视网膜病变或白内障等微血管并发症发生发展的一个重要因素。醛糖还原酶(ALR2)催化NADPH依赖的葡萄糖还原为山梨醇,是预防这些并发症的一个重要靶点。新型醛糖还原酶抑制剂的开发有望从基于结构的设计方法中受益匪浅。基于抑制剂IDD 594与人ALR2复合物的超高分辨率晶体结构进行虚拟筛选,鉴定出两种IC(50)值在低微摩尔至亚微摩尔范围内的化合物。基于配体与其结合口袋之间的已知相互作用,我们简化了先导结构以给出最小结构要求,并从市售化合物开发了合成途径。对新合成的化合物进行了ALR2抑制活性测定,结果显示其抑制活性低至纳摩尔范围。对我们系列中最有效的衍生物进行晶体结构分析,揭示了抑制剂的结合模式。

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Structure-based optimization of aldose reductase inhibitors originating from virtual screening.基于虚拟筛选的醛糖还原酶抑制剂的结构优化
ChemMedChem. 2009 May;4(5):809-19. doi: 10.1002/cmdc.200800410.
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Probing flexibility and "induced-fit" phenomena in aldose reductase by comparative crystal structure analysis and molecular dynamics simulations.通过比较晶体结构分析和分子动力学模拟探究醛糖还原酶的柔韧性和“诱导契合”现象。
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Virtual screening for inhibitors of human aldose reductase.人醛糖还原酶抑制剂的虚拟筛选
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Pursuing aldose reductase inhibitors through in situ cross-docking and similarity-based virtual screening.通过原位交叉对接和基于相似性的虚拟筛选寻找醛糖还原酶抑制剂。
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Structural and thermodynamic study on aldose reductase: nitro-substituted inhibitors with strong enthalpic binding contribution.醛糖还原酶的结构与热力学研究:具有强焓结合贡献的硝基取代抑制剂
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How reliable are current docking approaches for structure-based drug design? Lessons from aldose reductase.当前基于结构的药物设计对接方法的可靠性如何?来自醛糖还原酶的经验教训。
Angew Chem Int Ed Engl. 2007;46(19):3575-8. doi: 10.1002/anie.200603625.
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Progresses in the pursuit of aldose reductase inhibitors: the structure-based lead optimization step.醛糖还原酶抑制剂研究进展:基于结构的先导化合物优化。
Eur J Med Chem. 2012 May;51:216-26. doi: 10.1016/j.ejmech.2012.02.045. Epub 2012 Mar 5.
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Validation of an automated procedure for the prediction of relative free energies of binding on a set of aldose reductase inhibitors.一种用于预测一组醛糖还原酶抑制剂结合相对自由能的自动化程序的验证。
Bioorg Med Chem. 2007 Dec 15;15(24):7865-77. doi: 10.1016/j.bmc.2007.08.019. Epub 2007 Aug 22.
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Evidence for a novel binding site conformer of aldose reductase in ligand-bound state.醛糖还原酶在配体结合状态下新型结合位点构象的证据。
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High-resolution crystal structure of aldose reductase complexed with the novel sulfonyl-pyridazinone inhibitor exhibiting an alternative active site anchoring group.与具有替代活性位点锚定基团的新型磺酰基哒嗪酮抑制剂复合的醛糖还原酶的高分辨率晶体结构。
J Mol Biol. 2006 Feb 10;356(1):45-56. doi: 10.1016/j.jmb.2005.10.067. Epub 2005 Nov 10.

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