Huang Sui
Institute for Biocomplexity and Informatics, University of Calgary, Calgary, AB, Canada.
Bioessays. 2009 May;31(5):546-60. doi: 10.1002/bies.200800189.
The stunning possibility of "reprogramming" differentiated somatic cells to express a pluripotent stem cell phenotype (iPS, induced pluripotent stem cell) and the "ground state" character of pluripotency reveal fundamental features of cell fate regulation that lie beyond existing paradigms. The rarity of reprogramming events appears to contradict the robustness with which the unfathomably complex phenotype of stem cells can reliably be generated. This apparent paradox, however, is naturally explained by the rugged "epigenetic landscape" with valleys representing "preprogrammed" attractor states that emerge from the dynamical constraints of the gene regulatory network. This article provides a pedagogical primer to the fundamental principles of gene regulatory networks as integrated dynamic systems and reviews recent insights in gene expression noise and fate determination, thereby offering a formal framework that may help us to understand why cell fate reprogramming events are inherently rare and yet so robust.
将分化的体细胞“重编程”以表达多能干细胞表型(诱导多能干细胞,iPS)这一惊人可能性以及多能性的“基态”特征揭示了细胞命运调控的基本特征,这些特征超出了现有范式。重编程事件的罕见性似乎与能够可靠产生极其复杂的干细胞表型的稳健性相矛盾。然而,这种明显的矛盾可以自然地由崎岖的“表观遗传景观”来解释,其中的低谷代表从基因调控网络的动态约束中出现的“预编程”吸引子状态。本文为作为整合动态系统的基因调控网络的基本原理提供了一份教学入门,并综述了基因表达噪声和命运决定方面的最新见解,从而提供了一个正式框架,可能有助于我们理解为什么细胞命运重编程事件本质上罕见但却如此稳健。