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甲酰胺和苯之间的酰胺-π 相互作用。

Amide-pi interactions between formamide and benzene.

机构信息

Department of Theoretical Drug Design, Graduate School of Pharmaceutical Sciences, Kyoto University, Sakyo-ku, Kyoto 606-8501, Japan.

出版信息

J Comput Chem. 2009 Nov 15;30(14):2267-76. doi: 10.1002/jcc.21212.

Abstract

High-level ab initio calculations have been carried out using a formamide-benzene model system to evaluate amide-pi interactions. The interaction energies were estimated as a sum of the CCSD(T) correlation contribution and the HF energy at the complete basis set limit, for the geometries of the model structures at the energy minimum obtained by potential energy surface (PES) scans. NH/pi geometry in a face-on configuration was found to be the most attractive among the various geometries considered, with interaction energy of -3.75 kcal/mol. An interaction energy of -2.08 kcal/mol was calculated for the stacked N/Center type geometry, where the nitrogen atom of formamide points directly toward the center of the aromatic ring. The weakest C=O/pi geometry, where a carbonyl oxygen atom points toward the plane of the aromatic ring, was found to have energy minimum at an intermolecular distance of 3.67 A from the PES, with a repulsive interaction energy less than 1 kcal/mol. However, if there are simultaneous attractive interactions with other parts of the molecule besides the amide group, the weak repulsion could be easily overcome, to give a C=O/pi geometry interaction.

摘要

采用甲酰胺-苯模型体系进行了高水平从头算计算,以评估酰胺-π相互作用。使用 CCSD(T)相关贡献和 HF 能量的总和来估计相互作用能,其中 HF 能量是在完全基组极限下计算的,用于由势能面 (PES) 扫描获得的模型结构的能量最小化构象。在各种考虑的构象中,NH/π面-面构型是最具吸引力的,相互作用能为-3.75 kcal/mol。对于堆叠的 N/Center 型构象,计算得到的相互作用能为-2.08 kcal/mol,其中甲酰胺的氮原子直接指向芳环的中心。羰基氧原子指向芳环平面的最弱 C=O/π 构型,在与 PES 的距离为 3.67 Å 时具有能量最小,排斥相互作用能小于 1 kcal/mol。然而,如果除了酰胺基团之外,分子的其他部分同时存在吸引力相互作用,则很容易克服这种弱排斥作用,从而形成 C=O/π 构型的相互作用。

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