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核聚腺苷酸结合蛋白Pab2与新生转录本的共转录募集及与正在翻译的信使核糖核蛋白的关联。

Cotranscriptional recruitment of the nuclear poly(A)-binding protein Pab2 to nascent transcripts and association with translating mRNPs.

作者信息

Lemieux Caroline, Bachand François

机构信息

RNA Group, Department of Biochemistry, Université de Sherbrooke, Québec, Canada.

出版信息

Nucleic Acids Res. 2009 Jun;37(10):3418-30. doi: 10.1093/nar/gkp207. Epub 2009 Mar 31.

DOI:10.1093/nar/gkp207
PMID:19336419
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2691841/
Abstract

Synthesis of the pre-mRNA poly(A) tail in the nucleus has important consequences on the translational activity of the mature mRNA in the cytoplasm. In most eukaryotes, nuclear polyadenylation of pre-mRNAs is thought to require the nuclear poly(A)-binding protein (PABP2/PABPN1) for poly(A) tail synthesis and ultimate length control. As yet, however, the extent of the association between PABP2 and the exported mRNA remains poorly understood. Here, we used chromatin immunoprecipitation (ChIP) assays to show that the fission yeast ortholog of mammalian PABP2 (Pab2) is cotranscriptionally recruited to active genes. Notably, the association of Pab2 to genes precedes that of a typical 3'-processing/polyadenylation factor, suggesting that Pab2 recruitment during the transcription cycle precedes polyadenylation. The inclusion of an RNase step in our ChIP and immunoprecipitation assays suggests that Pab2 is cotranscriptionally recruited via nascent mRNA ribonucleoprotein (mRNPs). Tandem affinity purification coupled with mass spectrometry also revealed that Pab2 associates with several ribosomal proteins as well as general translation factors. Importantly, whereas previous results suggest that the nuclear poly(A)-binding protein is not present on cytoplasmic mRNAs, we show that fission yeast Pab2 is associated with polysomes. Our findings suggest that Pab2 is recruited to nascent mRNPs during transcription and remains associated with translated mRNPs after nuclear export.

摘要

细胞核中前体mRNA聚腺苷酸尾的合成对细胞质中成熟mRNA的翻译活性具有重要影响。在大多数真核生物中,前体mRNA的细胞核聚腺苷酸化被认为需要细胞核聚腺苷酸结合蛋白(PABP2/PABPN1)来进行聚腺苷酸尾的合成及最终长度控制。然而,目前对于PABP2与输出的mRNA之间的关联程度仍知之甚少。在此,我们利用染色质免疫沉淀(ChIP)分析表明,哺乳动物PABP2在裂殖酵母中的直系同源物(Pab2)在转录共发生过程中被招募至活跃基因。值得注意的是,Pab2与基因的关联先于典型的3'加工/聚腺苷酸化因子,这表明转录周期中Pab2的招募先于聚腺苷酸化。我们的ChIP和免疫沉淀分析中包含核糖核酸酶步骤,这表明Pab2是通过新生mRNA核糖核蛋白(mRNP)在转录共发生过程中被招募的。串联亲和纯化结合质谱分析还揭示,Pab2与几种核糖体蛋白以及一般翻译因子相关联。重要的是,尽管先前的结果表明细胞核聚腺苷酸结合蛋白不存在于细胞质mRNA上,但我们发现裂殖酵母Pab2与多核糖体相关联。我们的研究结果表明,Pab2在转录过程中被招募至新生mRNP,并且在细胞核输出后仍与已翻译的mRNP相关联。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/406e/2691841/a54d31a8cf75/gkp207f7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/406e/2691841/ba4ff32caf30/gkp207f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/406e/2691841/8a8a968abd0f/gkp207f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/406e/2691841/206a856cbf94/gkp207f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/406e/2691841/f17c999a2f55/gkp207f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/406e/2691841/0daea1810fc9/gkp207f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/406e/2691841/88a83f3d9fe0/gkp207f6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/406e/2691841/a54d31a8cf75/gkp207f7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/406e/2691841/ba4ff32caf30/gkp207f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/406e/2691841/8a8a968abd0f/gkp207f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/406e/2691841/206a856cbf94/gkp207f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/406e/2691841/f17c999a2f55/gkp207f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/406e/2691841/0daea1810fc9/gkp207f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/406e/2691841/88a83f3d9fe0/gkp207f6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/406e/2691841/a54d31a8cf75/gkp207f7.jpg

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