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用于亚细胞定位的预测方法的监督集成

Supervised ensembles of prediction methods for subcellular localization.

作者信息

Assfalg Johannes, Gong Jing, Kriegel Hans-Peter, Pryakhin Alexey, Wei Tiandi, Zimek Arthur

机构信息

Institute for Informatics, Ludwig-Maximilians-Universität München, Oettingenstrasse 67, 80538 Munich, Germany.

出版信息

J Bioinform Comput Biol. 2009 Apr;7(2):269-85. doi: 10.1142/s0219720009004072.

DOI:10.1142/s0219720009004072
PMID:19340915
Abstract

In the past decade, many automated prediction methods for the subcellular localization of proteins have been proposed, utilizing a wide range of principles and learning approaches. Based on an experimental evaluation of different methods and their theoretical properties, we propose to combine a well-balanced set of existing approaches to new, ensemble-based prediction methods. The experimental evaluation shows that our ensembles improve substantially over the underlying base methods.

摘要

在过去十年中,已经提出了许多用于蛋白质亚细胞定位的自动预测方法,这些方法利用了广泛的原理和学习方法。基于对不同方法及其理论特性的实验评估,我们建议将一组均衡的现有方法组合成新的基于集成的预测方法。实验评估表明,我们的集成方法比基础方法有显著改进。

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1
Supervised ensembles of prediction methods for subcellular localization.用于亚细胞定位的预测方法的监督集成
J Bioinform Comput Biol. 2009 Apr;7(2):269-85. doi: 10.1142/s0219720009004072.
2
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引用本文的文献

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Use of Chou's 5-steps rule to predict the subcellular localization of gram-negative and gram-positive bacterial proteins by multi-label learning based on gene ontology annotation and profile alignment.利用 Chou 的 5 步规则,通过基于基因本体论注释和序列比对的多标签学习,预测革兰氏阴性和革兰氏阳性细菌蛋白质的亚细胞定位。
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Minimalist ensemble algorithms for genome-wide protein localization prediction.基因组范围内蛋白质定位预测的简约集成算法。
BMC Bioinformatics. 2012 Jul 3;13:157. doi: 10.1186/1471-2105-13-157.
3
Both the hydrophobicity and a positively charged region flanking the C-terminal region of the transmembrane domain of signal-anchored proteins play critical roles in determining their targeting specificity to the endoplasmic reticulum or endosymbiotic organelles in Arabidopsis cells.
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Plant Cell. 2011 Apr;23(4):1588-607. doi: 10.1105/tpc.110.082230. Epub 2011 Apr 22.
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TESTLoc: protein subcellular localization prediction from EST data.TESTLoc:从 EST 数据预测蛋白质亚细胞定位。
BMC Bioinformatics. 2010 Nov 15;11:563. doi: 10.1186/1471-2105-11-563.