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基于核数据和线粒体数据的鳕形目(硬骨鱼纲,副棘鳍鱼亚目)各科之间的系统发育关系。

Phylogenetic relationships among families of Gadiformes (Teleostei, Paracanthopterygii) based on nuclear and mitochondrial data.

作者信息

Roa-Varón Adela, Ortí Guillermo

机构信息

Center for Marine Science, University of North Carolina, Wilmington, 5600 Marvin K. Moss Ln, NC 28409, USA.

出版信息

Mol Phylogenet Evol. 2009 Sep;52(3):688-704. doi: 10.1016/j.ympev.2009.03.020. Epub 2009 Apr 2.

DOI:10.1016/j.ympev.2009.03.020
PMID:19345274
Abstract

Phylogenetic hypotheses among Gadiformes fishes at the suborder, family, and subfamily levels are controversial. To address this problem, we analyze nuclear and mitochondrial DNA (mtDNA) sequences for the most extensive taxonomic sampling compiled to date, representing all of the recognized families and subfamilies in the order (except the monotypic family Lyconidae). Our study sampled 117 species from 46 genera, comprising around 20% of the species described for the order (more than 60% of all genera in the order) and produced 2740 bp of DNA sequence data for each species. Our analysis was successful in confirming the monophyly of Gadiformes and most of the proposed families for the order, but alternative hypotheses of sister-group relationships among families were poorly resolved. Our results are consistent with dividing Gadiformes into 12 families in three suborders, Muraenolepidoidei, Macrouroidei, and Gadoidei. Muraenolepidoidei contains the single family Muraenolepididae. The suborder Macrouroidei includes at least three families: Macrouridae, Macruronidae and Steindachneriidae. Macrouridae is deeply divided into two well-supported subfamilies: Macrourinae and Bathygadinae, suggesting that Bathygadinae may be ranked at the family level. The suborder Gadoidei includes the families: Merlucciidae, Melanonidae, Euclichthyidae, Gadidae, Ranicipitidae, and Bregmacerotidae. Additionally, Trachyrincinae could be ranked at family level including two subfamilies: Trachyrincinae and Macrouroidinae within Gadoidei. Further taxonomic sampling and sequencing efforts are needed in order to corroborate these relationships.

摘要

鳕形目鱼类在亚目、科和亚科水平上的系统发育假说存在争议。为了解决这个问题,我们分析了核DNA和线粒体DNA(mtDNA)序列,这些序列来自于迄今为止编制的最广泛的分类学样本,代表了该目中所有已确认的科和亚科(单型科狼鱼科除外)。我们的研究从46个属中采样了117个物种,约占该目描述物种的20%(超过该目所有属的60%),并为每个物种生成了2740 bp的DNA序列数据。我们的分析成功地证实了鳕形目的单系性以及该目中大多数提议的科,但科之间姐妹群关系的替代假说解析度较差。我们的结果与将鳕形目分为三个亚目(海鳗鳕亚目、鼠尾鳕亚目和鳕亚目)中的12个科一致。海鳗鳕亚目包含单一科海鳗鳕科。鼠尾鳕亚目至少包括三个科:鼠尾鳕科、无须鳕科和施氏鳕科。鼠尾鳕科又深深分为两个得到充分支持的亚科:鼠尾鳕亚科和深海鳕亚科,这表明深海鳕亚科可能应提升到科的级别。鳕亚目包括以下科:无须鳕科、黑鳕科、欧氏鳕科、鳕科、长颌鳕科和线鳗科。此外,粗鳍鱼亚科可能应提升到科的级别,在鳕亚目内包括两个亚科:粗鳍鱼亚科和鼠尾鳕亚科。为了证实这些关系,还需要进一步的分类学采样和测序工作。

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