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Allosteric transitions in biological nanomachines are described by robust normal modes of elastic networks.
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2
Low-frequency normal modes that describe allosteric transitions in biological nanomachines are robust to sequence variations.
Proc Natl Acad Sci U S A. 2006 May 16;103(20):7664-9. doi: 10.1073/pnas.0510426103. Epub 2006 May 8.
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Allosteric transitions in the chaperonin GroEL are captured by a dominant normal mode that is most robust to sequence variations.
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Allostery wiring diagrams in the transitions that drive the GroEL reaction cycle.
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Crystal structure of a GroEL-ADP complex in the relaxed allosteric state at 2.7 Å resolution.
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Conformational changes in the chaperonin GroEL: new insights into the allosteric mechanism.
J Mol Biol. 1999 Mar 5;286(4):1241-9. doi: 10.1006/jmbi.1998.2568.

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Statistical learning of protein elastic network from positional covariance matrix.
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The effect of dimerization and ligand binding on the dynamics of Kaposi's sarcoma-associated herpesvirus protease.
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Correlated Motions in Structural Biology.
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Identification of Allosteric Effects in Proteins by Elastic Network Models.
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State-dependent sequential allostery exhibited by chaperonin TRiC/CCT revealed by network analysis of Cryo-EM maps.
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Integrated Computational Approaches and Tools forAllosteric Drug Discovery.
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Shared Signature Dynamics Tempered by Local Fluctuations Enables Fold Adaptability and Specificity.
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本文引用的文献

1
Allosteric transitions in the chaperonin GroEL are captured by a dominant normal mode that is most robust to sequence variations.
Biophys J. 2007 Oct 1;93(7):2289-99. doi: 10.1529/biophysj.107.105270. Epub 2007 Jun 8.
2
Symmetry, form, and shape: guiding principles for robustness in macromolecular machines.
Annu Rev Biophys Biomol Struct. 2006;35:115-33. doi: 10.1146/annurev.biophys.35.040405.102010.
3
Low-frequency normal modes that describe allosteric transitions in biological nanomachines are robust to sequence variations.
Proc Natl Acad Sci U S A. 2006 May 16;103(20):7664-9. doi: 10.1073/pnas.0510426103. Epub 2006 May 8.
4
Glu257 in GroEL is a sensor involved in coupling polypeptide substrate binding to stimulation of ATP hydrolysis.
Protein Sci. 2006 Jun;15(6):1270-6. doi: 10.1110/ps.062100606. Epub 2006 May 2.
5
Coarse-grained normal mode analysis in structural biology.
Curr Opin Struct Biol. 2005 Oct;15(5):586-92. doi: 10.1016/j.sbi.2005.08.007.
6
Probing the "annealing" mechanism of GroEL minichaperone using molecular dynamics simulations.
J Mol Biol. 2005 Jul 22;350(4):817-29. doi: 10.1016/j.jmb.2005.05.012.
8
9
Dynamics of actomyosin interactions in relation to the cross-bridge cycle.
Philos Trans R Soc Lond B Biol Sci. 2004 Dec 29;359(1452):1843-55. doi: 10.1098/rstb.2004.1527.
10
Cold-sensitive mutants of Taq DNA polymerase provide a hot start for PCR.
Nucleic Acids Res. 2003 Nov 1;31(21):6139-47. doi: 10.1093/nar/gkg813.

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