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αβα合成折叠体的构象异构体特异性和非对映异构体特异性光谱:Ac-Ala-β-Ala-NHBn

Conformer-Specific and Diastereomer-Specific Spectroscopy of αβα Synthetic Foldamers: Ac-Ala-β-Ala-NHBn.

作者信息

Blodgett Karl N, Zhu Xiao, Walsh Patrick S, Sun Dewei, Lee Jaeyeon, Choi Soo Hyuk, Zwier Timothy S

机构信息

Department of Chemistry , Purdue University , 560 Oval Drive , West Lafayette , Indiana 47907-2084 , United States.

Research Computing , Information Technology at Purdue (ITaP) , West Lafayette , Indiana 47907-2114 , United States.

出版信息

J Phys Chem A. 2018 Apr 12;122(14):3697-3710. doi: 10.1021/acs.jpca.8b01273. Epub 2018 Mar 30.

Abstract

The folding propensities of a capped, cyclically constrained, mixed α/β diastereomer pair, ( SRSS) Ac-Ala-β-Ala-NHBn (hereafter RS) and ( SSRS) Ac-Ala-β-Ala-NHBn ( SR), have been studied in a molecular beam using single-conformation spectroscopic techniques. These α/β-tripeptides contain a cyclohexane ring across each C -C bond, at which positions their stereochemistries differ. This cyclic constraint requires any stable species to adopt one of two ACHC configurations: equatorial C═O/axial NH or equatorial NH/axial C═O. Resonant two-photon ionization (R2PI) and infrared-ultraviolet hole-burning (IR-UV HB) spectroscopy were used in the S-S region of the UV chromophore, revealing the presence of three unique conformational isomers of RS and two of SR. Resonant ion-dip infrared spectra were recorded in both the NH stretch (3200-3500 cm) and the amide I (1600-1800 cm) regions. These experimental vibrational frequencies were compared with the scaled calculated normal-mode frequencies from density functional theory at the M05-2X/6-31+G(d) level of theory, leading to structural assignments of the observed conformations. The RS diastereomer is known in crystalline form to preferentially form a C11/C9 mixed helix, in which alternating hydrogen bonds are arranged in near antiparallel orientation. This structure is preserved in one of the main conformers observed in the gas phase but is in competition with both a tightly folded C7/C12/C8/C7 structure, in which all four amide NH groups and four C═O groups are engaged in hydrogen bonding, as well as a cap influenced C7/NH···π/C11 structure. The SR diastereomer is destabilized by inducing backbone dihedral angles that lie outside the typical Ramachandran angles. This diastereomer also forms a C11/C9 mixed helix as well as a cap influenced bifurcated C7-C11/NH···π/C7 structure as the global energy minimum. Assigned structures are compared with the reported crystal structure of analogous α/β-tripeptides, and disconnectivity graphs are presented to give an overview of the complicated potential energy surface of this tripeptide diastereomer pair.

摘要

利用单构象光谱技术,在分子束中研究了一种带有封端、环状受限的混合α/β非对映异构体对,即(SRSS)Ac-Ala-β-Ala-NHBn(以下简称RS)和(SSRS)Ac-Ala-β-Ala-NHBn(SR)的折叠倾向。这些α/β-三肽在每个C-C键处都含有一个环己烷环,它们的立体化学在这些位置上有所不同。这种环状限制要求任何稳定的物种采用两种ACHC构型之一:赤道面C═O/轴向NH或赤道面NH/轴向C═O。在发色团的S-S区域使用共振双光子电离(R2PI)和红外-紫外空穴烧蚀(IR-UV HB)光谱,揭示了RS存在三种独特的构象异构体,SR存在两种。在NH伸缩振动(3200 - 3500 cm)和酰胺I(1600 - 1800 cm)区域都记录了共振离子偶极红外光谱。将这些实验振动频率与在M05 - 2X/6 - 31+G(d)理论水平下从密度泛函理论计算得到的标度化正常模式频率进行比较,从而对观察到的构象进行结构归属。已知RS非对映异构体的晶体形式优先形成C11/C9混合螺旋,其中交替的氢键以近乎反平行的方向排列。这种结构在气相中观察到的主要构象之一中得以保留,但与一种紧密折叠的C7/C12/C8/C7结构竞争,在该结构中所有四个酰胺NH基团和四个C═O基团都参与氢键形成,以及一种受封端影响的C7/NH···π/C11结构。SR非对映异构体通过诱导位于典型拉马钱德兰角之外的主链二面角而变得不稳定。这种非对映异构体也形成C11/C9混合螺旋以及一种受封端影响的分叉C7 - C11/NH···π/C7结构作为全局能量最小值。将归属的结构与报道的类似α/β-三肽的晶体结构进行比较,并给出不连通性图以概述该三肽非对映异构体对复杂的势能面。

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