Szigyártó Imola Cs, Mihály Judith, Wacha András, Bogdán Dóra, Juhász Tünde, Kohut Gergely, Schlosser Gitta, Zsila Ferenc, Urlacher Vlada, Varga Zoltán, Fülöp Ferenc, Bóta Attila, Mándity István, Beke-Somfai Tamás
Institute of Materials and Environmental Chemistry , Research Centre for Natural Sciences , H-1117 Budapest , Hungary . Email:
Department of Organic Chemistry , Faculty of Pharmacy , Semmelweis University , H-1092 Budapest , Hungary.
Chem Sci. 2020 Jun 15;11(26):6868-6881. doi: 10.1039/d0sc01344g. eCollection 2020 Jul 14.
Self-assembling peptides offer a versatile set of tools for bottom-up construction of supramolecular biomaterials. Among these compounds, non-natural peptidic foldamers experience increased focus due to their structural variability and lower sensitivity to enzymatic degradation. However, very little is known about their membrane properties and complex oligomeric assemblies - key areas for biomedical and technological applications. Here we designed short, acyclic β-peptide sequences with alternating amino acid stereoisomers to obtain non-helical molecules having hydrophilic charged residues on one side, and hydrophobic residues on the other side, with the N-terminus preventing formation of infinite fibrils. Our results indicate that these β-peptides form small oligomers both in water and in lipid bilayers and are stabilized by intermolecular hydrogen bonds. In the presence of model membranes, they either prefer the headgroup regions or they insert between the lipid chains. Molecular dynamics (MD) simulations suggest the formation of two-layered bundles with their side chains facing opposite directions when compared in water and in model membranes. Analysis of the MD calculations showed hydrogen bonds inside each layer, however, not between the layers, indicating a dynamic assembly. Moreover, the aqueous form of these oligomers can host fluorescent probes as well as a hydrophobic molecule similarly to lipid transfer proteins. For the tested, peptides the mixed chirality pattern resulted in similar assemblies despite sequential differences. Based on this, it is hoped that the presented molecular framework will inspire similar oligomers with diverse functionality.
自组装肽为超分子生物材料的自下而上构建提供了一套多功能工具。在这些化合物中,非天然肽折叠体因其结构多样性和对酶降解的较低敏感性而受到越来越多的关注。然而,人们对它们的膜性质和复杂的寡聚体组装了解甚少,而这些是生物医学和技术应用的关键领域。在这里,我们设计了具有交替氨基酸立体异构体的短链无环β肽序列,以获得非螺旋分子,其一侧具有亲水性带电残基,另一侧具有疏水性残基,且N端可防止无限原纤维的形成。我们的结果表明,这些β肽在水和脂质双层中均形成小寡聚体,并通过分子间氢键稳定。在模型膜存在的情况下,它们要么优先分布在头部区域,要么插入脂质链之间。分子动力学(MD)模拟表明,与在水和模型膜中的情况相比,它们形成了侧链朝向相反方向的双层束。对MD计算的分析表明,每层内部存在氢键,但层间不存在氢键,这表明组装是动态的。此外,这些寡聚体的水性形式可以像脂质转运蛋白一样容纳荧光探针以及疏水分子。对于所测试的肽,尽管序列不同,但混合手性模式导致了相似的组装。基于此,希望所提出的分子框架能够激发具有不同功能的类似寡聚体。