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利用抑制性消减杂交技术鉴定昆虫无滋式卵巢中与卵壳形成相关的基因。

Identifying genes related to choriogenesis in insect panoistic ovaries by Suppression Subtractive Hybridization.

作者信息

Irles Paula, Bellés Xavier, Piulachs M Dolors

机构信息

Institut de Biologia Evolutiva (UPF-CSIC), Passeig Marítim de la Barceloneta, Barcelona, Spain.

出版信息

BMC Genomics. 2009 Apr 30;10:206. doi: 10.1186/1471-2164-10-206.

Abstract

BACKGROUND

Insect ovarioles are classified into two categories: panoistic and meroistic, the later having apparently evolved from an ancestral panoistic type. Molecular data on oogenesis is practically restricted to meroistic ovaries. If we aim at studying the evolutionary transition from panoistic to meroistic, data on panoistic ovaries should be gathered. To this end, we planned the construction of a Suppression Subtractive Hybridization (SSH) library to identify genes involved in panoistic choriogenesis, using the cockroach Blattella germanica as model.

RESULTS

We constructed a post-vitellogenic ovary library by SSH to isolate genes involved in choriogenesis in B. germanica. The tester library was prepared with an ovary pool from 6- to 7-day-old females, whereas the driver library was prepared with an ovary pool from 3- to 4-day-old females. From the SSH library, we obtained 258 high quality sequences which clustered into 34 unique sequences grouped in 19 contigs and 15 singlets. The sequences were compared against non-redundant NCBI databases using BLAST. We found that 44% of the unique sequences had homologous sequences in known genes of other organisms, whereas 56% had no significant similarity to any of the databases entries. A Gene Ontology analysis was carried out, classifying the 34 sequences into different functional categories. Seven of these gene sequences, representative of different categories and processes, were chosen to perform expression studies during the first gonadotrophic cycle by real-time PCR. Results showed that they were mainly expressed during post-vitellogenesis, which validates the SSH technique. In two of them corresponding to novel genes, we demonstrated that they are specifically expressed in the cytoplasm of follicular cells in basal oocytes at the time of choriogenesis.

CONCLUSION

The SSH approach has proven to be useful in identifying ovarian genes expressed after vitellogenesis in B. germanica. For most of the genes, functions related to choriogenesis are postulated. The relatively high percentage of novel genes obtained and the practical absence of chorion genes typical of meroistic ovaries suggest that mechanisms regulating chorion formation in panoistic ovaries are significantly different from those of meroistic ones.

摘要

背景

昆虫的卵巢管分为两类:无滋式和有滋式,后者显然是从祖先的无滋式进化而来。关于卵子发生的分子数据实际上仅限于有滋式卵巢。如果我们旨在研究从无滋式到有滋式的进化转变,就应该收集无滋式卵巢的数据。为此,我们计划构建一个抑制性消减杂交(SSH)文库,以德国小蠊为模型,鉴定参与无滋式卵壳形成的基因。

结果

我们通过SSH构建了一个卵黄生成后的卵巢文库,以分离德国小蠊中参与卵壳形成的基因。测试文库由6至7日龄雌性的卵巢池制备,而驱动文库由3至4日龄雌性的卵巢池制备。从SSH文库中,我们获得了258个高质量序列,这些序列聚集成34个独特序列,分为19个重叠群和15个单拷贝。使用BLAST将这些序列与非冗余的NCBI数据库进行比较。我们发现44%的独特序列在其他生物体的已知基因中有同源序列,而56%与任何数据库条目均无显著相似性。进行了基因本体分析,将34个序列分类到不同的功能类别中。从这些代表不同类别和过程的基因序列中,选择了7个通过实时PCR在第一个促性腺周期中进行表达研究。结果表明它们主要在卵黄生成后表达,这验证了SSH技术。在其中两个对应新基因的序列中,我们证明它们在卵壳形成时基础卵母细胞的滤泡细胞胞质中特异性表达。

结论

SSH方法已被证明可用于鉴定德国小蠊卵黄生成后表达的卵巢基因。对于大多数基因,推测其与卵壳形成有关。获得的新基因比例相对较高,且几乎没有有滋式卵巢典型的卵壳基因,这表明无滋式卵巢中调节卵壳形成的机制与有滋式卵巢的显著不同。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bb80/2683872/c3f69095d8d9/1471-2164-10-206-1.jpg

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