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迈向体外系统工程

Towards the engineering of in vitro systems.

作者信息

Hold Christoph, Panke Sven

机构信息

Department of Biosystems Science and Engineering, ETH Zurich, Basle, Switzerland.

出版信息

J R Soc Interface. 2009 Aug 6;6 Suppl 4(Suppl 4):S507-21. doi: 10.1098/rsif.2009.0110.focus. Epub 2009 May 27.

Abstract

Synthetic biology aims at rationally implementing biological systems from scratch. Given the complexity of living systems and our current lack of understanding of many aspects of living cells, this is a major undertaking. The design of in vitro systems can be considerably easier, because they can consist of fewer constituents, are quasi time invariant, their parameter space can be better accessed and they can be much more easily perturbed and then analysed chemically and mathematically. However, even for simplified in vitro systems, following a comprehensively rational design procedure is still difficult. When looking at a comparatively simple system, such as a medium-sized enzymatic reaction network as it is represented by glycolysis, major issues such as a lack of comprehensive enzyme kinetics and of suitable knowledge on crucial design parameters remain. Nevertheless, in vitro systems are very suitable to overcome these obstacles and therefore well placed to act as a stepping stone to engineering living systems.

摘要

合成生物学旨在从零开始合理构建生物系统。鉴于生命系统的复杂性以及我们目前对活细胞许多方面缺乏了解,这是一项重大任务。体外系统的设计可能会容易得多,因为它们可以由更少的成分组成,几乎是时不变的,其参数空间更容易获取,并且更容易受到扰动,然后可以通过化学和数学方法进行分析。然而,即使对于简化的体外系统,遵循全面合理的设计程序仍然很困难。当研究一个相对简单的系统,例如以糖酵解为代表的中等规模酶促反应网络时,仍然存在诸如缺乏全面的酶动力学以及对关键设计参数缺乏合适认识等主要问题。尽管如此,体外系统非常适合克服这些障碍,因此非常适合作为构建生命系统的垫脚石。

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