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一种在多氯联苯降解途径中表现出底物通道化的醛缩酶-脱氢酶复合物的表征。

Characterization of an aldolase-dehydrogenase complex that exhibits substrate channeling in the polychlorinated biphenyls degradation pathway.

作者信息

Baker Perrin, Pan Dan, Carere Jason, Rossi Adam, Wang Weijun, Seah Stephen Y K

机构信息

Department of Molecular and Cellular Biology, University of Guelph, Guelph, Ontario, Canada.

出版信息

Biochemistry. 2009 Jul 14;48(27):6551-8. doi: 10.1021/bi9006644.

Abstract

An aldolase and dehydrogenase complex from the polychlorinated biphenyl degradation pathway of the bacterium Burkholderia xenovorans LB400 was purified. The aldolase, BphI, had the highest activity with Mn(2+) as the cofactor and was able to transform 4-hydroxy-2-oxopentanoate and 4-hydroxy-2-oxohexanoate to pyruvate and acetaldehyde or propionaldehyde with similar specificity constants. Aldolase activity was competitively inhibited by the pyruvate enolate analogue, oxalate, with a K(ic) of 0.93 microM. The pH-rate profiles suggested the involvement of a pK(a) 7.7 catalytic base in the reaction mechanism. BphI activity was activated 15-fold when substrate turnover was occurring in the dehydrogenase, BphJ, which can be attributed partially to nicotinamide coenzyme binding to BphJ. BphJ had similar specificity constants for acetaldehyde or propionaldehyde and was able to utilize aliphatic aldehydes from two to five carbons in length as substrates, although K(m) values for these aldehyes were >20 mM. When 4-hydroxy-2-oxopentanoate was provided as a substrate to the BphI-BphJ complex in a coupled enzyme assay, no lag in the progress curve of BphJ was observed. When 1 mM propionaldehyde was added exogenously to a reaction mixture containing 0.1 mM 4-hydroxy-2-oxopentanoate, 95% of the CoA esters produced was acetyl CoA. Conversely, 99% of the CoA esters produced was propionyl CoA when a 10-fold molar excess of exogenous acetaldehyde was added in a reaction mixture containing 4-hydroxy-2-oxohexanoate. These results demonstrate that acetaldehyde and propionaldehyde, products of the BphI reaction, are not released in the bulk solvent but are channeled directly to the dehydrogenase.

摘要

从细菌伯克霍尔德氏菌LB400的多氯联苯降解途径中纯化出一种醛缩酶和脱氢酶复合物。醛缩酶BphI以Mn(2+)作为辅因子时活性最高,能够以相似的特异性常数将4-羟基-2-氧代戊酸酯和4-羟基-2-氧代己酸酯转化为丙酮酸和乙醛或丙醛。醛缩酶活性受到丙酮酸烯醇化物类似物草酸盐的竞争性抑制,抑制常数K(ic)为0.93 microM。pH-速率曲线表明反应机制中存在一个pK(a)为7.7的催化碱。当底物在脱氢酶BphJ中周转时,BphI活性被激活了15倍,这部分可归因于烟酰胺辅酶与BphJ的结合。BphJ对乙醛或丙醛具有相似的特异性常数,并且能够利用碳链长度为2至5个碳的脂肪醛作为底物,尽管这些醛的K(m)值>20 mM。在偶联酶测定中,当向BphI-BphJ复合物提供4-羟基-2-氧代戊酸酯作为底物时,未观察到BphJ进程曲线的滞后现象。当向含有0.1 mM 4-羟基-2-氧代戊酸酯的反应混合物中额外添加1 mM丙醛时,产生的CoA酯中有95%是乙酰CoA。相反,当在含有4-羟基-2-氧代己酸酯的反应混合物中添加10倍摩尔过量的外源乙醛时,产生的CoA酯中有99%是丙酰CoA。这些结果表明,BphI反应的产物乙醛和丙醛不会释放到大量溶剂中,而是直接被输送到脱氢酶中。

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