Bonnivard Eric, Catrice Olivier, Ravaux Juliette, Brown Spencer C, Higuet Dominique
Equipe Génétique et Evolution, UMR Systématique Adaptation et Evolution (7138), Université Paris VI, 7 quai St. Bernard, 75252 Paris, France.
Genome. 2009 Jun;52(6):524-36. doi: 10.1139/g09-027.
Knowledge of genome size is a useful and necessary prerequisite for the development of many genomic resources. To better understand the origins and effects of DNA gains and losses among species, it is important to collect data from a broad taxonomic base, but also from particular ecosystems. Oceanic thermal vents are an interesting model to investigate genome size in very unstable environments. Here we provide data estimated by flow cytometry for 28 vent-living species among the most representative from different hydrothermal vents. We also report the genome size of closely related coastal decapods. Haploid C-values were compared with those previously reported for species from corresponding orders or infraorders. This is the first broad survey of 2C values in vent organisms. Contrary to expectations, it shows that certain hydrothermal vent species have particularly large genomes. The vent squat lobster Munidopsis recta has the largest genome yet reported for any anomuran: 2C=31.1 pg=30.4x10(9) bp. In several groups, such as Brachyura, Phyllodocida, and Veneroida, vent species have genomes that clearly rank at the high end of published values for each group. We also describe the highest DNA content yet recorded for the Brachyura (coastal crabs Xantho pilipes and Necora puber). Finally, analysis of genome size variation across populations revealed unexpected intraspecific variation in the vent shrimp Mirocaris fortunata that could not be attributed simply to ploidy changes.
基因组大小的知识是许多基因组资源开发有用且必要的先决条件。为了更好地理解物种间DNA增减的起源和影响,从广泛的分类学基础以及特定生态系统收集数据很重要。海洋热液喷口是研究非常不稳定环境中基因组大小的一个有趣模型。在此,我们提供了通过流式细胞术估算的来自不同热液喷口的最具代表性的28种生活在喷口的物种的数据。我们还报告了与之亲缘关系密切的沿海十足类动物的基因组大小。将单倍体C值与先前报道的相应目或亚目的物种的C值进行了比较。这是对喷口生物2C值的首次广泛调查。与预期相反,结果表明某些热液喷口物种具有特别大的基因组。喷口蹲龙虾直额芒螯虾拥有迄今报道的任何异尾类动物中最大的基因组:2C = 31.1 pg = 30.4×10⁹ bp。在几个类群中,如短尾类、叶须虫目和帘蛤目,喷口物种的基因组明显处于每组已发表值的高端。我们还描述了短尾类(沿海螃蟹黄眼蟹和肉球近方蟹)迄今记录到的最高DNA含量。最后,对不同种群基因组大小变异的分析揭示了喷口虾幸运微蟹意想不到的种内变异,这种变异不能简单地归因于倍性变化。