Zhang Yong, Straub John E
Department of Chemistry, Boston University, Boston, Massachusetts 02215, USA.
J Chem Phys. 2009 Jun 7;130(21):215101. doi: 10.1063/1.3147704.
The time scales and pathways of vibrational energy relaxation (VER) of the nu(4) and nu(7) modes of three nickel porphyrin models, nickel porphine (NiP), nickel protoporphyrin IX (Ni-heme), and nickel octaethylporphyrin (NiOEP), were studied using a non-Markovian time-dependent perturbation theory at the B3LYP/6-31G(d) level. When NiP is calculated with D(4h) symmetry, it has the planar structure and the same VER properties as ferrous iron porphine (FeP). The porphine cores of both Ni-heme and NiOEP were distorted from a planar geometry, assuming a nonplanar structure, similar to that of the heme structure in cytochrome c. The VER time scales of Ni-heme are found to be similar to those predicted for a planar iron heme, but the derived pathways have distinctly different features. In particular, the strong coupling between the nu(7) mode and the overtone of the approximately 350 cm(-1) gamma(7) mode, observed for planar porphyrins, is absent in both nonplanar nickel porphyrins. Direct energy exchange between the nu(4) and nu(7) modes is not observed in NiOEP, but is found to play an essential role in the VER of the nu(4) mode in Ni-heme. The Ni-heme isopropionate groups are involved in the dominant VER pathways of both the nu(4) and nu(7) modes of Ni-heme. However, in contrast with VER pathways derived in planar iron heme, the isopropionate groups are not observed to play an essential role relative to other side chains in spatially directing the vibrational energy flow.
使用非马尔可夫含时微扰理论,在B3LYP/6 - 31G(d)水平下研究了三种镍卟啉模型,即镍卟吩(NiP)、镍原卟啉IX(Ni - 血红素)和镍八乙基卟啉(NiOEP)的ν(4)和ν(7)模式的振动能量弛豫(VER)的时间尺度和途径。当以D(4h)对称性计算NiP时,它具有平面结构,并且与亚铁卟吩(FeP)具有相同的VER性质。Ni - 血红素和NiOEP的卟吩核心均偏离平面几何结构,呈现非平面结构,类似于细胞色素c中的血红素结构。发现Ni - 血红素的VER时间尺度与平面铁血红素预测的时间尺度相似,但推导得出的途径具有明显不同的特征。特别是,在平面卟啉中观察到的ν(7)模式与约350 cm⁻¹的γ(7)模式泛音之间的强耦合,在两种非平面镍卟啉中均不存在。在NiOEP中未观察到ν(4)和ν(7)模式之间的直接能量交换,但发现其在Ni - 血红素的ν(4)模式的VER中起重要作用。Ni - 血红素的异丙基参与了Ni - 血红素的ν(4)和ν(7)模式的主要VER途径。然而,与平面铁血红素中推导得出的VER途径相反,未观察到异丙基相对于其他侧链在空间上引导振动能量流动方面起重要作用。