Mohabatkar Hassan, Mohsenzadeh Sasan
Department of Biology, College of Sciences, Shiraz University, Shiraz 71454, Iran.
Protein Pept Lett. 2009;16(9):1017-23. doi: 10.2174/092986609789055269. Epub 2009 Sep 1.
Since there are not much experimental data available about different structural properties of Isfahan virus (ISFV), in the present investigation, computational study of G protein of ISFV was performed and the results were compared with G proteins of Chandipura virus (CHPV) and Piry virus (PV). Calculation of amino acid compositions of G proteins of viruses was done by PseAAC server. Predictions of localization, sequence of signal peptides, C, N and O glycosylation sites, transmembrane helices, cysteine bond positions and B cell epitopes of G proteins were performed by Virus-PLoc, Signal-CF, EnsembleGly, MemBrain, DiANNA and BCPREDS servers respectively. Similarities and differences between these glycoproteins were predicted and discussed.
由于关于伊斯法罕病毒(ISFV)不同结构特性的实验数据不多,因此在本研究中,对ISFV的G蛋白进行了计算研究,并将结果与钱迪普拉病毒(CHPV)和皮里病毒(PV)的G蛋白进行了比较。通过PseAAC服务器计算病毒G蛋白的氨基酸组成。分别通过Virus-PLoc、Signal-CF、EnsembleGly、MemBrain、DiANNA和BCPREDS服务器对G蛋白的定位、信号肽序列、C、N和O糖基化位点、跨膜螺旋、半胱氨酸键位置和B细胞表位进行预测。对这些糖蛋白之间的异同进行了预测和讨论。