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伊斯法罕病毒G蛋白与水泡病毒属其他两种密切相关病毒的相同蛋白的生物信息学比较。

Bioinformatics comparison of G protein of Isfahan virus with the same proteins of two other closely related viruses of the genus vesiculovirus.

作者信息

Mohabatkar Hassan, Mohsenzadeh Sasan

机构信息

Department of Biology, College of Sciences, Shiraz University, Shiraz 71454, Iran.

出版信息

Protein Pept Lett. 2009;16(9):1017-23. doi: 10.2174/092986609789055269. Epub 2009 Sep 1.

Abstract

Since there are not much experimental data available about different structural properties of Isfahan virus (ISFV), in the present investigation, computational study of G protein of ISFV was performed and the results were compared with G proteins of Chandipura virus (CHPV) and Piry virus (PV). Calculation of amino acid compositions of G proteins of viruses was done by PseAAC server. Predictions of localization, sequence of signal peptides, C, N and O glycosylation sites, transmembrane helices, cysteine bond positions and B cell epitopes of G proteins were performed by Virus-PLoc, Signal-CF, EnsembleGly, MemBrain, DiANNA and BCPREDS servers respectively. Similarities and differences between these glycoproteins were predicted and discussed.

摘要

由于关于伊斯法罕病毒(ISFV)不同结构特性的实验数据不多,因此在本研究中,对ISFV的G蛋白进行了计算研究,并将结果与钱迪普拉病毒(CHPV)和皮里病毒(PV)的G蛋白进行了比较。通过PseAAC服务器计算病毒G蛋白的氨基酸组成。分别通过Virus-PLoc、Signal-CF、EnsembleGly、MemBrain、DiANNA和BCPREDS服务器对G蛋白的定位、信号肽序列、C、N和O糖基化位点、跨膜螺旋、半胱氨酸键位置和B细胞表位进行预测。对这些糖蛋白之间的异同进行了预测和讨论。

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