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细菌细胞中tRNA水平受蛋白质中氨基酸使用情况的影响。

Levels of tRNAs in bacterial cells as affected by amino acid usage in proteins.

作者信息

Yamao F, Andachi Y, Muto A, Ikemura T, Osawa S

机构信息

Department of Biology, Faculty of Science, Nagoya University, Japan.

出版信息

Nucleic Acids Res. 1991 Nov 25;19(22):6119-22. doi: 10.1093/nar/19.22.6119.

DOI:10.1093/nar/19.22.6119
PMID:1956771
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC329099/
Abstract

Transfer RNAs of Mycoplasma capricolum were separated by two-dimensional polyacrylamide gel electrophoresis, and the relative abundance of each of the 28 known tRNA species was measured. There existed a correlation between the relative amount of isoacceptor tRNAs and the frequency in choosing synonymous codons that could be translated by the isoacceptors. Furthermore, it was observed that the total amount of tRNAs for a particular amino acid was paralleled by the composition of the amino acid in ribosomal proteins. A similar relationship was obtained from reexamination of the previous data on Escherichia coli tRNAs, suggesting that the amount of tRNAs for an amino acid is affected by the usage of the amino acid in proteins.

摘要

通过二维聚丙烯酰胺凝胶电泳分离了山羊支原体的转运RNA,并测定了28种已知tRNA种类中每一种的相对丰度。同功受体tRNA的相对量与可由这些同功受体翻译的同义密码子的选择频率之间存在相关性。此外,观察到特定氨基酸的tRNA总量与核糖体蛋白质中该氨基酸的组成平行。对大肠杆菌tRNA的先前数据重新检查也得到了类似的关系,这表明氨基酸的tRNA量受蛋白质中该氨基酸使用情况的影响。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c10e/329099/67cc03100665/nar00102-0047-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c10e/329099/67cc03100665/nar00102-0047-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c10e/329099/67cc03100665/nar00102-0047-a.jpg

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本文引用的文献

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Proc Natl Acad Sci U S A. 1961 Aug;47(8):1141-9. doi: 10.1073/pnas.47.8.1141.
2
The nucleotide sequence of glycine tRNA from Mycoplasma mycoides sp. capri.来自山羊支原体丝状亚种的甘氨酸转运RNA的核苷酸序列。
Nucleic Acids Res. 1980 Jun 25;8(12):2783-6. doi: 10.1093/nar/8.12.2783.
3
Correlation between the abundance of yeast transfer RNAs and the occurrence of the respective codons in protein genes. Differences in synonymous codon choice patterns of yeast and Escherichia coli with reference to the abundance of isoaccepting transfer RNAs.
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G3 (Bethesda). 2018 Oct 3;8(10):3173-3183. doi: 10.1534/g3.118.200185.
4
Co-adaption of tRNA gene copy number and amino acid usage influences translation rates in three life domains.tRNA 基因拷贝数和氨基酸使用的共同适应影响三个生命领域的翻译速率。
DNA Res. 2017 Dec 1;24(6):623-633. doi: 10.1093/dnares/dsx030.
5
Differential Regulation of rRNA and tRNA Transcription from the rRNA-tRNA Composite Operon in Escherichia coli.大肠杆菌中rRNA-tRNA复合操纵子对rRNA和tRNA转录的差异调控
PLoS One. 2016 Dec 22;11(12):e0163057. doi: 10.1371/journal.pone.0163057. eCollection 2016.
6
Inducible suppression of global translation by overuse of rare codons.通过过度使用稀有密码子对整体翻译进行诱导抑制。
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7
Viral CD8 T cell epitope nucleotide composition shows evidence of short- and long-term evolutionary strategies.病毒CD8 T细胞表位核苷酸组成显示出短期和长期进化策略的证据。
Immunogenetics. 2015 Jan;67(1):15-24. doi: 10.1007/s00251-014-0811-4. Epub 2014 Nov 8.
8
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9
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5
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8
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Microbiol Rev. 1985 Dec;49(4):419-55. doi: 10.1128/mr.49.4.419-455.1985.
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