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牛胰脱氧核糖核酸酶1中DNA结合残基的诱变:对序列选择性核酸酶序列识别机制的研究。

Mutagenesis of the DNA binding residues in bovine pancreatic DNase 1: an investigation into the mechanism of sequence discrimination by a sequence selective nuclease.

作者信息

Doherty A J, Worrall A F, Connolly B A

机构信息

Department of Biochemistry (SERC Molecular recognition Initiative Centre), University of Southampton, UK.

出版信息

Nucleic Acids Res. 1991 Nov 25;19(22):6129-32. doi: 10.1093/nar/19.22.6129.

DOI:10.1093/nar/19.22.6129
PMID:1956772
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC329101/
Abstract

The sequence selectivity of DNase 1 cleavage has been investigated by site-directed mutagenesis of a chemically synthesised gene. Two key DNA binding residues have been conservatively altered (Y76F and R41K) or have had their side-chains truncated (Y76A and R41A) and the effect on the cleavage of tyr T promoter DNA has been noted. It would appear from these studies that DNase 1 is not sensitive to minor groove width via these DNA-contacting residues, and it is suggested that DNA helical stiffness is a controlling parameter in determining DNase 1 sequence selectivity.

摘要

通过对化学合成基因进行定点诱变,研究了DNase 1切割的序列选择性。两个关键的DNA结合残基被保守性改变(Y76F和R41K)或其侧链被截短(Y76A和R41A),并记录了对酪氨酸T启动子DNA切割的影响。从这些研究中可以看出,DNase 1通过这些与DNA接触的残基对小沟宽度不敏感,并且有人提出DNA螺旋刚度是决定DNase 1序列选择性的控制参数。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dccc/329101/4eb2a767dce1/nar00102-0057-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dccc/329101/4eb2a767dce1/nar00102-0057-a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dccc/329101/4eb2a767dce1/nar00102-0057-a.jpg

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本文引用的文献

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Crystalline desoxyribonuclease; isolation and general properties; spectrophotometric method for the measurement of desoxyribonuclease activity.结晶脱氧核糖核酸酶;分离及一般性质;测定脱氧核糖核酸酶活性的分光光度法
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Importance of DNA stiffness in protein-DNA binding specificity.
Nature. 1987;329(6136):263-6. doi: 10.1038/329263a0.
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Effect of non-contacted bases on the affinity of 434 operator for 434 repressor and Cro.非接触碱基对434操纵子与434阻遏蛋白及Cro亲和力的影响
Nature. 1987;326(6116):886-8. doi: 10.1038/326886a0.
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Structure refined to 2A of a nicked DNA octanucleotide complex with DNase I.与脱氧核糖核酸酶I形成的带切口的DNA八核苷酸复合物的结构精修至2埃。
Nature. 1988 Mar 31;332(6163):464-8. doi: 10.1038/332464a0.
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Structural junctions in DNA: the influence of flanking sequence on nuclease digestion specificities.DNA中的结构连接:侧翼序列对核酸酶消化特异性的影响。
Nucleic Acids Res. 1985 Jun 25;13(12):4445-67. doi: 10.1093/nar/13.12.4445.