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1
Positive selection of tyrosine loss in metazoan evolution.
Science. 2009 Sep 25;325(5948):1686-8. doi: 10.1126/science.1174301. Epub 2009 Jul 9.
2
Comment on "Positive selection of tyrosine loss in metazoan evolution".
Science. 2011 May 20;332(6032):917; author reply 917. doi: 10.1126/science.1187374.
3
Testing whether metazoan tyrosine loss was driven by selection against promiscuous phosphorylation.
Mol Biol Evol. 2015 Jan;32(1):144-52. doi: 10.1093/molbev/msu284. Epub 2014 Oct 13.
4
The intrinsic substrate specificity of the human tyrosine kinome.
Nature. 2024 May;629(8014):1174-1181. doi: 10.1038/s41586-024-07407-y. Epub 2024 May 8.
5
Tyrosine kinase signaling and the emergence of multicellularity.
Biochim Biophys Acta. 2012 Jun;1823(6):1053-7. doi: 10.1016/j.bbamcr.2012.03.009. Epub 2012 Mar 27.
6
Cell biology. Evolving cell signals.
Science. 2009 Sep 25;325(5948):1635-6. doi: 10.1126/science.1180331.
7
Phosphotyrosine signalling and the origin of animal multicellularity.
Proc Biol Sci. 2017 Aug 16;284(1860). doi: 10.1098/rspb.2017.0681.
8
Evolution of key cell signaling and adhesion protein families predates animal origins.
Science. 2003 Jul 18;301(5631):361-3. doi: 10.1126/science.1083853.
9
Classification and Lineage Tracing of SH2 Domains Throughout Eukaryotes.
Methods Mol Biol. 2017;1555:59-75. doi: 10.1007/978-1-4939-6762-9_4.
10
Evolution of SH2 domains and phosphotyrosine signalling networks.
Philos Trans R Soc Lond B Biol Sci. 2012 Sep 19;367(1602):2556-73. doi: 10.1098/rstb.2012.0107.

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2
The fitness cost of spurious phosphorylation.
EMBO J. 2024 Oct;43(20):4720-4751. doi: 10.1038/s44318-024-00200-7. Epub 2024 Sep 10.
3
The fitness cost of spurious phosphorylation.
bioRxiv. 2023 Oct 10:2023.10.08.561337. doi: 10.1101/2023.10.08.561337.
4
Resurrecting essential amino acid biosynthesis in mammalian cells.
Elife. 2022 Sep 27;11:e72847. doi: 10.7554/eLife.72847.
5
Dual data and motif clustering improves the modeling and interpretation of phosphoproteomic data.
Cell Rep Methods. 2022 Feb 28;2(2). doi: 10.1016/j.crmeth.2022.100167. Epub 2022 Feb 14.
7
Evolutionary and functional lessons from human-specific amino acid substitution matrices.
NAR Genom Bioinform. 2021 Sep 16;3(3):lqab079. doi: 10.1093/nargab/lqab079. eCollection 2021 Sep.
8
Universal and taxon-specific trends in protein sequences as a function of age.
Elife. 2021 Jan 8;10:e57347. doi: 10.7554/eLife.57347.
10
Evolution of protein kinase substrate recognition at the active site.
PLoS Biol. 2019 Jun 24;17(6):e3000341. doi: 10.1371/journal.pbio.3000341. eCollection 2019 Jun.

本文引用的文献

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Tyrosine phosphorylation: thirty years and counting.
Curr Opin Cell Biol. 2009 Apr;21(2):140-6. doi: 10.1016/j.ceb.2009.01.028. Epub 2009 Mar 9.
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Do amino acid biosynthetic costs constrain protein evolution in Saccharomyces cerevisiae?
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Linear motif atlas for phosphorylation-dependent signaling.
Sci Signal. 2008 Sep 2;1(35):ra2. doi: 10.1126/scisignal.1159433.
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The protist, Monosiga brevicollis, has a tyrosine kinase signaling network more elaborate and diverse than found in any known metazoan.
Proc Natl Acad Sci U S A. 2008 Jul 15;105(28):9674-9. doi: 10.1073/pnas.0801314105. Epub 2008 Jul 10.
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Evolution of the phospho-tyrosine signaling machinery in premetazoan lineages.
Proc Natl Acad Sci U S A. 2008 Jul 15;105(28):9680-4. doi: 10.1073/pnas.0803161105. Epub 2008 Jul 3.
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The genome of the choanoflagellate Monosiga brevicollis and the origin of metazoans.
Nature. 2008 Feb 14;451(7180):783-8. doi: 10.1038/nature06617.
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Directional and quantitative phosphorylation networks.
Brief Funct Genomic Proteomic. 2008 Jan;7(1):17-26. doi: 10.1093/bfgp/eln001. Epub 2008 Feb 12.
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Systematic discovery of in vivo phosphorylation networks.
Cell. 2007 Jun 29;129(7):1415-26. doi: 10.1016/j.cell.2007.05.052. Epub 2007 Jun 14.
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Evolution in Mendelian Populations.
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Reading protein modifications with interaction domains.
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