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Genome sequence of the bioplastic-producing "Knallgas" bacterium Ralstonia eutropha H16.产生物塑料的“爆气性细菌”嗜油假单胞菌H16的基因组序列。
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Oxygen and Hydrogen Isotope Fractionation during Cellulose Metabolism in Lemna gibba L.浮萍属植物中纤维素代谢过程中的氧和氢同位素分馏
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How is Ferredoxin-NADP Reductase Involved in the NADP Photoreduction of Chloroplasts?铁氧还蛋白-NADP还原酶如何参与叶绿体的NADP光还原?
Photosynth Res. 2004;80(1-3):307-13. doi: 10.1023/B:PRES.0000030456.96329.f9.
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Hydrogen isotopic fractionations during desaturation and elongation associated with polyunsaturated fatty acid biosynthesis in marine macroalgae.大型海藻中与多不饱和脂肪酸生物合成相关的去饱和和延长过程中的氢同位素分馏
Phytochemistry. 2004 Aug;65(15):2293-300. doi: 10.1016/j.phytochem.2004.06.030.
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Hydrogen and carbon isotopic fractionations of lipid biosynthesis among terrestrial (C3, C4 and CAM) and aquatic plants.陆地(C3、C4和景天酸代谢)植物与水生植物脂质生物合成过程中的氢和碳同位素分馏
Phytochemistry. 2004 May;65(10):1369-81. doi: 10.1016/j.phytochem.2004.03.036.
9
Effect of zwf gene knockout on the metabolism of Escherichia coli grown on glucose or acetate.zwf基因敲除对在葡萄糖或乙酸盐上生长的大肠杆菌代谢的影响。
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Carbon and hydrogen isotopic fractionation during lipid biosynthesis in a higher plant (Cryptomeria japonica).高等植物(日本柳杉)脂质生物合成过程中的碳和氢同位素分馏
Phytochemistry. 2004 Feb;65(3):323-30. doi: 10.1016/j.phytochem.2003.12.003.

细菌脂质中较大的D/H变化反映了核心代谢途径。

Large D/H variations in bacterial lipids reflect central metabolic pathways.

作者信息

Zhang Xinning, Gillespie Aimee L, Sessions Alex L

机构信息

Environmental Science and Engineering Program and Division of Geological and Planetary Sciences, California Institute of Technology, Pasadena, CA 91125, USA.

出版信息

Proc Natl Acad Sci U S A. 2009 Aug 4;106(31):12580-6. doi: 10.1073/pnas.0903030106. Epub 2009 Jul 17.

DOI:10.1073/pnas.0903030106
PMID:19617564
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2722351/
Abstract

Large hydrogen-isotopic (D/H) fractionations between lipids and growth water have been observed in most organisms studied to date. These fractionations are generally attributed to isotope effects in the biosynthesis of lipids, and are frequently assumed to be approximately constant for the purpose of reconstructing climatic variables. Here, we report D/H fractionations between lipids and water in 4 cultured members of the phylum Proteobacteria, and show that they can vary by up to 500 per thousand in a single organism. The variation cannot be attributed to lipid biosynthesis as there is no significant change in these pathways between cultures, nor can it be attributed to changing substrate D/H ratios. More importantly, lipid/water D/H fractionations vary systematically with metabolism: chemoautotrophic growth (approximately -200 to -400 per thousand), photoautotrophic growth (-150 to -250 per thousand), heterotrophic growth on sugars (0 to -150 per thousand), and heterotrophic growth on TCA-cycle precursors and intermediates (-50 to +200 per thousand) all yield different fractionations. We hypothesize that the D/H ratios of lipids are controlled largely by those of NADPH used for biosynthesis, rather than by isotope effects within the lipid biosynthetic pathway itself. Our results suggest that different central metabolic pathways yield NADPH--and indirectly lipids--with characteristic isotopic compositions. If so, lipid deltaD values could become an important biogeochemical tool for linking lipids to energy metabolism, and would yield information that is highly complementary to that provided by (13)C about pathways of carbon fixation.

摘要

在迄今为止研究的大多数生物体中,都观察到脂质与生长用水之间存在较大的氢同位素(D/H)分馏现象。这些分馏现象通常归因于脂质生物合成中的同位素效应,并且为了重建气候变量,人们常常假定它们大致恒定。在此,我们报告了变形菌门4个培养成员中脂质与水之间的D/H分馏情况,并表明在单个生物体中它们的变化幅度可达千分之500。这种变化不能归因于脂质生物合成,因为不同培养物之间这些途径没有显著变化,也不能归因于底物D/H比值的改变。更重要的是,脂质/水D/H分馏随代谢而系统地变化:化学自养生长(约千分之 -200至 -400)、光合自养生长(千分之 -150至 -250)、以糖为底物的异养生长(千分之0至 -150)以及以三羧酸循环前体和中间产物为底物的异养生长(千分之 -50至 +200)都产生不同的分馏结果。我们推测,脂质的D/H比值在很大程度上受用于生物合成的NADPH的D/H比值控制,而不是受脂质生物合成途径本身的同位素效应控制。我们的结果表明,不同的中心代谢途径产生具有特征性同位素组成的NADPH,进而间接产生具有特征性同位素组成的脂质。如果是这样,脂质δD值可能成为将脂质与能量代谢联系起来的重要生物地球化学工具,并且将产生与由¹³C提供的关于碳固定途径的信息高度互补的信息。