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基于图形处理器的神经母细胞瘤基质分类

Stroma classification for neuroblastoma on graphics processors.

作者信息

Ruiz Antonio, Sertel Olcay, Ujaldón Manuel, Catalyurek Umit, Saltz Joel, Gurcan Metin N

机构信息

Computer Architecture Department, University of Málaga, Málaga, Spain.

出版信息

Int J Data Min Bioinform. 2009;3(3):280-98. doi: 10.1504/ijdmb.2009.026702.

Abstract

Neuroblastoma is one of the most common childhood cancers. We are developing an image analysis system to assist pathologists in their prognosis. Since this system operates on relatively large-scale images and requires sophisticated algorithms, computerised analysis takes a long time to execute. In this paper, we propose a novel approach to benefit from high memory bandwidth and strong floating-point capabilities of graphics processing units. The proposed approach achieves a promising classification accuracy of 99.4% and an execution performance with a gain factor up to 45 times compared to hand-optimised C++ code running on the CPU.

摘要

神经母细胞瘤是儿童期最常见的癌症之一。我们正在开发一种图像分析系统,以协助病理学家进行预后判断。由于该系统处理的是相对大规模的图像且需要复杂的算法,计算机化分析执行起来耗时较长。在本文中,我们提出了一种新颖的方法,以利用图形处理单元的高内存带宽和强大的浮点运算能力。与在CPU上运行的手工优化的C++代码相比,该方法实现了高达99.4%的可观分类准确率,执行性能提升了45倍。

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