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一株耐辐射奇球菌的分离鉴定及其 16S rRNA 基因序列分析

Arenimonas oryziterrae sp. nov., isolated from a field of rice (Oryza sativa L.) managed under a no-tillage regime, and reclassification of Aspromonas composti as Arenimonas composti comb. nov.

机构信息

Division of Applied Life Science (BK 21), PMBBRC & EB-NCRC, Gyeongsang National University, Jinju 660-701, Republic of Korea.

出版信息

Int J Syst Evol Microbiol. 2009 Dec;59(Pt 12):2967-72. doi: 10.1099/ijs.0.006031-0. Epub 2009 Jul 23.

DOI:10.1099/ijs.0.006031-0
PMID:19628604
Abstract

The taxonomic position of a novel bacterial strain, YC6267(T) isolated from a field of rice (Oryza sativa L.) managed under a no-tillage regime in Jinju, Korea, was studied using a polyphasic taxonomic approach. Cells of the strain were Gram-stain-negative, rod-shaped and aerobic. It grew at 15-37 degrees C (optimum at 28 degrees C). Growth of the strain occurred between pH 5.0 and 10.0, with an optimum of pH 7.0-8.0. The G+C content of the total DNA was 65.8 mol%. The 16S rRNA gene sequence of the strain was most closely related to species of the genera Arenimonas (95.6-94.4 %) and Aspromonas (95.1 %), with <95.0 % similarity to species of the genus Lysobacter and other genera of the family Xanthomonadaceae. Chemotaxonomic data (major quinone Q-8; major polar lipids phosphatidylethanolamine, phosphatidylglycerol and diphosphatidylglycerol; and major fatty acids iso-C(15 : 0), iso-C(14 : 0), iso-C(16 : 0), and iso-C(17 : 1)omega9c) supported the affiliation of strain YC6267(T) to the genus Arenimonas. Phylogenetic analysis based on 16S rRNA gene sequences and biochemical and physiological characteristics strongly supported the genotypic and phenotypic differentiation of strain YC6267(T) from described species of the genus Arenimonas. Strain YC6267(T), therefore, represents a novel species, for which the name Arenimonas oryziterrae sp. nov. is proposed. The type strain is YC6267(T) (=KCTC 22247(T) =DSM 21050(T)). In addition, the reclassification of Aspromonas composti as Arenimonas composti comb. nov. is proposed (type strain TR7-09(T) =KCTC 12666(T) =DSM 18010(T)). A common line of descent and a number of shared phenotypic traits support this reclassification.

摘要

一株新型细菌菌株 YC6267(T) 的分类地位研究,该菌株从韩国锦州市免耕稻田的土壤中分离得到。采用多相分类法进行研究。该菌株细胞呈革兰氏阴性、杆状、需氧。它在 15-37°C 下生长(最佳温度为 28°C)。该菌株在 pH5.0 到 10.0 之间生长,最佳 pH 值为 7.0-8.0。总 DNA 的 G+C 含量为 65.8mol%。该菌株的 16S rRNA 基因序列与 Arenimonas 属(95.6-94.4%)和 Aspromonas 属(95.1%)的种最为密切相关,与 Lysobacter 属和黄单胞菌科其他属的种的相似度<95.0%。化学分类数据(主要醌 Q-8;主要极性脂磷脂酰乙醇胺、磷脂酰甘油和双磷脂酰甘油;主要脂肪酸异-C(15:0)、异-C(14:0)、异-C(16:0)和异-C(17:1)ω9c)支持菌株 YC6267(T) 属于 Arenimonas 属。基于 16S rRNA 基因序列和生化及生理特征的系统发育分析强烈支持菌株 YC6267(T) 在基因型和表型上与已描述的 Arenimonas 属种的分化。因此,菌株 YC6267(T) 代表一个新的种,建议将其命名为 Arenimonas oryziterrae sp. nov.。模式菌株为 YC6267(T)(=KCTC 22247(T) =DSM 21050(T))。此外,建议将 Aspromonas composti 重新分类为 Arenimonas composti comb. nov.(模式菌株 TR7-09(T) =KCTC 12666(T) =DSM 18010(T))。共同的进化关系和许多共同的表型特征支持这种重新分类。

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