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MLGA:一种诊断眼部发育异常中基因缺失的经济有效方法。

MLGA: a cost-effective approach to the diagnosis of gene deletions in eye development anomalies.

作者信息

Wyatt Alexander W, Ragge Nicola

机构信息

Department of Physiology, Anatomy and Genetics, University of Oxford, Oxford, UK.

出版信息

Mol Vis. 2009 Jul 28;15:1445-8.

PMID:19641633
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2716932/
Abstract

Whole gene deletions or duplications are an important cause of genetic disease and phenotypic variation. Targeted techniques for the routine testing of gross rearrangements have become essential tools for diagnostic researchers with the search for the most cost-effective and efficient tool assuming high priority. We used the new selector technique, MLGA (multiplex ligation-dependent genome amplification), to confirm deletions in two genes, SOX2 (SRY [sex determining region Y]) box 2) and OTX2 (orthodenticle homeobox 2), in individuals with developmental eye disease. We conclude that MLGA has the potential to be a useful technique in diagnostic research for the identification of deletions or duplications of known genes due to its speed and relatively low cost.

摘要

全基因缺失或重复是遗传疾病和表型变异的重要原因。用于大规模重排常规检测的靶向技术已成为诊断研究人员的重要工具,寻找最具成本效益和效率的工具被置于高度优先地位。我们使用了新的选择技术——多重连接依赖基因组扩增(MLGA),来确认患有发育性眼病的个体中两个基因SOX2(SRY[性别决定区Y]盒2)和OTX2(正齿状同源盒2)的缺失。我们得出结论,由于其速度和相对较低的成本,MLGA有潜力成为诊断研究中用于识别已知基因缺失或重复的有用技术。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f430/2716932/d1325acae60a/mv-v15-1445-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f430/2716932/d1325acae60a/mv-v15-1445-f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f430/2716932/d1325acae60a/mv-v15-1445-f1.jpg

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本文引用的文献

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Novel heterozygous OTX2 mutations and whole gene deletions in anophthalmia, microphthalmia and coloboma.无眼、小眼和脉络膜缺损中的新型杂合OTX2突变及全基因缺失
Hum Mutat. 2008 Nov;29(11):E278-83. doi: 10.1002/humu.20869.
2
Mutations in BMP4 cause eye, brain, and digit developmental anomalies: overlap between the BMP4 and hedgehog signaling pathways.BMP4基因的突变会导致眼睛、大脑和手指发育异常:BMP4与刺猬信号通路之间存在重叠。
Am J Hum Genet. 2008 Feb;82(2):304-19. doi: 10.1016/j.ajhg.2007.09.023. Epub 2008 Jan 31.
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Structural variation in the human genome: the impact of copy number variants on clinical diagnosis.
人类基因组中的结构变异:拷贝数变异对临床诊断的影响。
Genet Med. 2007 Sep;9(9):600-6. doi: 10.1097/gim.0b013e318149e1e3.
4
MLGA--a rapid and cost-efficient assay for gene copy-number analysis.MLGA——一种用于基因拷贝数分析的快速且经济高效的检测方法。
Nucleic Acids Res. 2007;35(17):e115. doi: 10.1093/nar/gkm651. Epub 2007 Sep 6.
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Copy-number variation and association studies of human disease.人类疾病的拷贝数变异与关联研究。
Nat Genet. 2007 Jul;39(7 Suppl):S37-42. doi: 10.1038/ng2080.
6
SOX2 anophthalmia syndrome: 12 new cases demonstrating broader phenotype and high frequency of large gene deletions.SOX2无眼畸形综合征:12例新病例显示出更广泛的表型和大基因缺失的高频率。
Br J Ophthalmol. 2007 Nov;91(11):1471-6. doi: 10.1136/bjo.2007.117929. Epub 2007 May 23.
7
Accurate, high-throughput typing of copy number variation using paralogue ratios from dispersed repeats.利用分散重复序列的旁系同源比率对拷贝数变异进行准确、高通量分型。
Nucleic Acids Res. 2007;35(3):e19. doi: 10.1093/nar/gkl1089. Epub 2006 Dec 14.
8
Global variation in copy number in the human genome.人类基因组中拷贝数的全球变异。
Nature. 2006 Nov 23;444(7118):444-54. doi: 10.1038/nature05329.
9
Structural variation in the human genome.人类基因组中的结构变异。
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Hum Mutat. 2002 Sep;20(3):218-26. doi: 10.1002/humu.10108.