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MLGA——一种用于基因拷贝数分析的快速且经济高效的检测方法。

MLGA--a rapid and cost-efficient assay for gene copy-number analysis.

作者信息

Isaksson Magnus, Stenberg Johan, Dahl Fredrik, Thuresson Ann-Charlotte, Bondeson Marie-Louise, Nilsson Mats

机构信息

Department of Genetics and Pathology, Uppsala University, Rudbeck Laboratory, Se-751 85 Uppsala, Sweden.

出版信息

Nucleic Acids Res. 2007;35(17):e115. doi: 10.1093/nar/gkm651. Epub 2007 Sep 6.

DOI:10.1093/nar/gkm651
PMID:17823203
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2034490/
Abstract

Structural variation is an important cause of genetic variation. Whole genome analysis techniques can efficiently identify copy-number variable regions but there is a need for targeted methods, to verify and accurately size variable regions, and to diagnose large sample cohorts. We have developed a technique based on multiplex amplification of size-coded selectively circularized genomic fragments, which is robust, cheaper and more rapid than current multiplex targeted copy-number assays.

摘要

结构变异是遗传变异的一个重要原因。全基因组分析技术能够有效地识别拷贝数可变区域,但仍需要靶向方法来验证和精确确定可变区域的大小,并对大样本队列进行诊断。我们开发了一种基于对大小编码的选择性环化基因组片段进行多重扩增的技术,该技术比当前的多重靶向拷贝数检测方法更稳健、更便宜且更快速。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/00d1/2034490/f99bfc727186/gkm651f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/00d1/2034490/b7b58cfbb53b/gkm651f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/00d1/2034490/f99bfc727186/gkm651f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/00d1/2034490/b7b58cfbb53b/gkm651f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/00d1/2034490/f99bfc727186/gkm651f2.jpg

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本文引用的文献

1
Global variation in copy number in the human genome.人类基因组中拷贝数的全球变异。
Nature. 2006 Nov 23;444(7118):444-54. doi: 10.1038/nature05329.
2
Structural variation in the human genome.人类基因组中的结构变异。
Nat Rev Genet. 2006 Feb;7(2):85-97. doi: 10.1038/nrg1767.
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Allele quantification using molecular inversion probes (MIP).使用分子倒置探针(MIP)进行等位基因定量分析。
Biotechniques. 2010 Jan;48(1):35-8. doi: 10.2144/000113342.
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MLGA: a cost-effective approach to the diagnosis of gene deletions in eye development anomalies.MLGA:一种诊断眼部发育异常中基因缺失的经济有效方法。
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eCOMPAGT -- efficient combination and management of phenotypes and genotypes for genetic epidemiology.eCOMPAGT——用于遗传流行病学的表型和基因型的高效组合与管理
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A single molecule array for digital targeted molecular analyses.用于数字靶向分子分析的单分子阵列
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ProbeMaker: an extensible framework for design of sets of oligonucleotide probes.探针制作工具:用于设计寡核苷酸探针集的可扩展框架。
BMC Bioinformatics. 2005 Sep 19;6:229. doi: 10.1186/1471-2105-6-229.
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PieceMaker: selection of DNA fragments for selector-guided multiplex amplification.片段制作器:用于选择器引导的多重扩增的DNA片段选择
Nucleic Acids Res. 2005 Apr 28;33(8):e72. doi: 10.1093/nar/gni071.
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Multiplex amplification enabled by selective circularization of large sets of genomic DNA fragments.通过大量基因组DNA片段的选择性环化实现多重扩增。
Nucleic Acids Res. 2005 Apr 28;33(8):e71. doi: 10.1093/nar/gni070.
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Comparative genomic hybridization using oligonucleotide microarrays and total genomic DNA.使用寡核苷酸微阵列和全基因组DNA的比较基因组杂交
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