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非均相导体状溶剂化模型。

Heterogeneous conductorlike solvation model.

作者信息

Si Dejun, Li Hui

机构信息

Department of Chemistry, University of Nebraska-Lincoln, Lincoln, Nebraska 68588, USA.

出版信息

J Chem Phys. 2009 Jul 28;131(4):044123. doi: 10.1063/1.3187527.

Abstract

A heterogeneous conductorlike solvation model (conductorlike screening model/conductorlike polarizable continuum model) that uses different local effective dielectrics for different portions of the solute cavity surface is implemented for quantum chemical Hartree-Fock and Kohn-Sham methods. A variational treatment is used to form the heterogeneous solvation operator, so a simple analytic expression of the energy gradients, which are vital for geometry optimization and molecular dynamics simulation, is derived and implemented. Using the new Fixed Points with Variable Areas surface tessellation scheme, continuous and smooth potential energy surfaces as well as analytic gradients are obtained for this heterogeneous model. Application of the heterogeneous solvation model to a realistic quantum model consisting of 101 atoms for the type-1 Cu center in rusticyanin shows that the desolvation due to protein burial can likely raise the reduction potential by approximately 200 mV and, including the heterogeneity in geometry optimization, can likely affect the results by approximately 2 kcal/mol or approximately 70 mV.

摘要

一种非均匀导体样溶剂化模型(导体样屏蔽模型/导体样极化连续介质模型)被应用于量子化学哈特里-福克方法和科恩-沙姆方法,该模型针对溶质腔表面的不同部分使用不同的局部有效介电常数。采用变分处理来形成非均匀溶剂化算符,从而推导出并实现了对于几何优化和分子动力学模拟至关重要的能量梯度的简单解析表达式。使用新的可变面积固定点表面细分方案,针对此非均匀模型获得了连续且平滑的势能面以及解析梯度。将非均匀溶剂化模型应用于由101个原子组成的用于rusticyanin中1型铜中心的实际量子模型,结果表明,由于蛋白质包埋导致的去溶剂化可能使还原电位升高约200 mV,并且包括几何优化中的非均匀性在内,可能使结果受到约2 kcal/mol或约70 mV的影响。

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