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基于来自纽形动物门的新线粒体基因组数据探讨冠轮动物门的系统发育和线粒体基因顺序变异

Phylogeny and mitochondrial gene order variation in Lophotrochozoa in the light of new mitogenomic data from Nemertea.

作者信息

Podsiadlowski Lars, Braband Anke, Struck Torsten H, von Döhren Jörn, Bartolomaeus Thomas

机构信息

Abteilung Evolutionsbiologie, Institut für Evolutionsbiologie und Okologie, Universität Bonn, Germany.

出版信息

BMC Genomics. 2009 Aug 6;10:364. doi: 10.1186/1471-2164-10-364.

Abstract

BACKGROUND

The new animal phylogeny established several taxa which were not identified by morphological analyses, most prominently the Ecdysozoa (arthropods, roundworms, priapulids and others) and Lophotrochozoa (molluscs, annelids, brachiopods and others). Lophotrochozoan interrelationships are under discussion, e.g. regarding the position of Nemertea (ribbon worms), which were discussed to be sister group to e.g. Mollusca, Brachiozoa or Platyhelminthes. Mitochondrial genomes contributed well with sequence data and gene order characters to the deep metazoan phylogeny debate.

RESULTS

In this study we present the first complete mitochondrial genome record for a member of the Nemertea, Lineus viridis. Except two trnP and trnT, all genes are located on the same strand. While gene order is most similar to that of the brachiopod Terebratulina retusa, sequence based analyses of mitochondrial genes place nemerteans close to molluscs, phoronids and entoprocts without clear preference for one of these taxa as sister group.

CONCLUSION

Almost all recent analyses with large datasets show good support for a taxon comprising Annelida, Mollusca, Brachiopoda, Phoronida and Nemertea. But the relationships among these taxa vary between different studies. The analysis of gene order differences gives evidence for a multiple independent occurrence of a large inversion in the mitochondrial genome of Lophotrochozoa and a re-inversion of the same part in gastropods. We hypothesize that some regions of the genome have a higher chance for intramolecular recombination than others and gene order data have to be analysed carefully to detect convergent rearrangement events.

摘要

背景

新的动物系统发育学确定了几个通过形态学分析未被识别的分类群,最显著的是蜕皮动物总门(节肢动物、线虫、鳃曳虫等)和冠轮动物总门(软体动物、环节动物、腕足动物等)。冠轮动物总门内部的相互关系仍在讨论中,例如关于纽形动物(纽虫)的位置,有人认为它们是软体动物、苔藓虫或扁形动物等的姐妹群。线粒体基因组的序列数据和基因排列特征为后生动物深层系统发育学的争论提供了有力支持。

结果

在本研究中,我们展示了纽形动物绿纽虫(Lineus viridis)的首个完整线粒体基因组记录。除了两个trnP和trnT基因外,所有基因都位于同一条链上。虽然基因排列与腕足动物钝圆穿孔贝(Terebratulina retusa)最为相似,但基于线粒体基因的序列分析表明,纽形动物与软体动物、帚虫和内肛动物关系密切,没有明显倾向于将其中某一个分类群作为姐妹群。

结论

几乎所有最近使用大型数据集进行的分析都有力支持了一个包含环节动物、软体动物、腕足动物、帚虫和纽形动物的分类群。但这些分类群之间的关系在不同研究中有所不同。对基因排列差异的分析表明,冠轮动物总门的线粒体基因组中多次独立出现了一个大的倒位,而腹足纲动物中同一部分又发生了一次重新倒位。我们推测,基因组的某些区域比其他区域发生分子内重组的机会更高,因此必须仔细分析基因排列数据以检测趋同的重排事件。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8428/2728741/6a42e75dfcdc/1471-2164-10-364-1.jpg

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