Nose Takeru, Tokunaga Takatoshi, Shimohigashi Yasuyuki
Laboratory of Structure-Function Biochemistry, Department of Chemistry, Faculty of Sciences, Kyushu University, 6-10-1 Hakozaki, Higashi-ku, Fukuoka 812-8581, Japan.
Toxicol Lett. 2009 Dec 1;191(1):33-9. doi: 10.1016/j.toxlet.2009.08.001. Epub 2009 Aug 8.
We established a novel screening method to survey endocrine-disrupting chemicals by means of in silico docking calculations. Endocrine disruptors target the human nuclear receptor, which bind a chemical in a pocket presenting in the ligand-binding domain (LBD). The LBD alters its conformation, depending upon the binding of either agonist or antagonist. We discovered that the chemicals can be differentiated into either agonist or antagonist by the docking calculations of the chemical for the LBD. We used the crystal structures of both agonist-bound LBDs and antagonist-bond LBDs as templates in the docking calculations, and estimated binding energies to discriminate between agonist and antagonist bindings. This agonist/antagonist differential-docking screening (AADS) method predicted, for example, 4-(1-adamantyl)phenol as an agonist of the human estrogen receptor alpha (hERalpha). Indeed, this compound, one of the essential raw materials for nanoporous organosilicate thin films, was confirmed to exhibit strong agonist activity in the reporter-gene assay for hERalpha with a high binding affinity. The AADS method is an approach that appears to foresee both the binding ability and the agonist/antagonist function of chemicals for the target nuclear receptors.
我们建立了一种通过计算机对接计算来检测内分泌干扰化学物质的新型筛选方法。内分泌干扰物作用于人类核受体,该受体在配体结合域(LBD)的一个口袋中结合化学物质。LBD会根据激动剂或拮抗剂的结合而改变其构象。我们发现,通过对化学物质与LBD进行对接计算,可以将化学物质区分为激动剂或拮抗剂。在对接计算中,我们使用了与激动剂结合的LBD和与拮抗剂结合的LBD的晶体结构作为模板,并估算结合能以区分激动剂和拮抗剂的结合。例如,这种激动剂/拮抗剂差异对接筛选(AADS)方法预测4-(1-金刚烷基)苯酚是人雌激素受体α(hERα)的激动剂。实际上,这种作为纳米多孔有机硅薄膜重要原材料之一的化合物,在针对hERα的报告基因检测中被证实具有很强的激动剂活性和高结合亲和力。AADS方法似乎是一种能够预测化学物质对目标核受体的结合能力以及激动剂/拮抗剂功能的方法。