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硫代酮胸腺嘧啶独特的互变异构和识别特性?

Unique tautomeric and recognition properties of thioketothymines?

作者信息

Faustino Ignacio, Aviño Anna, Marchán Ivan, Luque F Javier, Eritja Ramon, Orozco Modesto

机构信息

Joint IRB-BSC Program on Computational Biology, Parc Científic de Barcelona, Josep Samitier 1-5, Barcelona 08028, Spain.

出版信息

J Am Chem Soc. 2009 Sep 9;131(35):12845-53. doi: 10.1021/ja904880y.

Abstract

The tautomeric and recognition properties of thymine, 2- and 4-thioketothymines have been studied by means of accurate ab initio methods combined with molecular dynamics simulations and free energy calculations. In contrast to previous suggestions in the literature, the replacement of carbonyl oxygens by sulfur atoms does not lead to dramatic changes in tautomeric properties of the pyrimidine derivatives neither in vacuum nor in aqueous solution. Moreover, the presence of thioketothymines induces only mild changes in DNA structure, stability and fidelity. Despite the fact that mismatching can largely stabilize minor tautomeric forms, thioketothymines are found in the canonical thioketo-form irrespective of the paired base. Our theoretical results, confirmed by new experimental studies, describe the complete tautomeric and recognition characteristics of thioketothymines and demonstrate that both 2-thioketo and 4-thioketothymine are excellent molecules to introduce special chemical properties in modified DNA.

摘要

通过精确的从头算方法结合分子动力学模拟和自由能计算,对胸腺嘧啶、2-硫代酮基胸腺嘧啶和4-硫代酮基胸腺嘧啶的互变异构和识别特性进行了研究。与文献中先前的观点相反,用硫原子取代羰基氧原子,无论是在真空中还是在水溶液中,都不会导致嘧啶衍生物互变异构性质发生显著变化。此外,硫代酮基胸腺嘧啶的存在仅会引起DNA结构、稳定性和保真度的轻微变化。尽管错配可以在很大程度上稳定次要互变异构形式,但无论配对碱基如何,硫代酮基胸腺嘧啶都以标准硫酮形式存在。我们的理论结果得到了新的实验研究的证实,描述了硫代酮基胸腺嘧啶完整的互变异构和识别特性,并证明2-硫酮基胸腺嘧啶和4-硫酮基胸腺嘧啶都是在修饰DNA中引入特殊化学性质的优良分子。

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