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雷帕霉素敏感磷酸化蛋白质组的表征揭示,Sch9是蛋白质合成的核心协调因子。

Characterization of the rapamycin-sensitive phosphoproteome reveals that Sch9 is a central coordinator of protein synthesis.

作者信息

Huber Alexandre, Bodenmiller Bernd, Uotila Aino, Stahl Michael, Wanka Stefanie, Gerrits Bertran, Aebersold Ruedi, Loewith Robbie

机构信息

Department of Molecular Biology, University of Geneva, Geneva, Switzerland.

出版信息

Genes Dev. 2009 Aug 15;23(16):1929-43. doi: 10.1101/gad.532109.

DOI:10.1101/gad.532109
PMID:19684113
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2725941/
Abstract

The target of rapamycin complex 1 (TORC1) is an essential multiprotein complex conserved from yeast to humans. Under favorable growth conditions, and in the absence of the macrolide rapamycin, TORC1 is active, and influences virtually all aspects of cell growth. Although two direct effectors of yeast TORC1 have been reported (Tap42, a regulator of PP2A phosphatases and Sch9, an AGC family kinase), the signaling pathways that couple TORC1 to its distal effectors were not well understood. To elucidate these pathways we developed and employed a quantitative, label-free mass spectrometry approach. Analyses of the rapamycin-sensitive phosphoproteomes in various genetic backgrounds revealed both documented and novel TORC1 effectors and allowed us to partition phosphorylation events between Tap42 and Sch9. Follow-up detailed characterization shows that Sch9 regulates RNA polymerases I and III, the latter via Maf1, in addition to translation initiation and the expression of ribosomal protein and ribosome biogenesis genes. This demonstrates that Sch9 is a master regulator of protein synthesis.

摘要

雷帕霉素靶蛋白复合体1(TORC1)是一种从酵母到人类都保守的重要多蛋白复合体。在有利的生长条件下,且在不存在大环内酯类雷帕霉素的情况下,TORC1具有活性,并几乎影响细胞生长的所有方面。尽管已经报道了酵母TORC1的两种直接效应器(Tap42,一种PP2A磷酸酶的调节剂;以及Sch9,一种AGC家族激酶),但将TORC1与其远端效应器偶联的信号通路尚未得到很好的理解。为了阐明这些通路,我们开发并采用了一种定量的、无标记质谱方法。对各种遗传背景下雷帕霉素敏感的磷酸化蛋白质组的分析揭示了已记录的和新的TORC1效应器,并使我们能够区分Tap42和Sch9之间的磷酸化事件。后续的详细表征表明,除了翻译起始以及核糖体蛋白和核糖体生物发生基因的表达外,Sch9还通过Maf1调节RNA聚合酶I和III。这表明Sch9是蛋白质合成的主要调节因子。

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本文引用的文献

1
Sfp1 interaction with TORC1 and Mrs6 reveals feedback regulation on TOR signaling.Sfp1与TORC1和Mrs6的相互作用揭示了对TOR信号传导的反馈调节。
Mol Cell. 2009 Mar 27;33(6):704-16. doi: 10.1016/j.molcel.2009.01.034.
2
Regulation of RNA polymerase III transcription involves SCH9-dependent and SCH9-independent branches of the target of rapamycin (TOR) pathway.RNA聚合酶III转录的调控涉及雷帕霉素靶蛋白(TOR)途径中依赖SCH9和不依赖SCH9的分支。
J Biol Chem. 2009 May 8;284(19):12604-8. doi: 10.1074/jbc.C900020200. Epub 2009 Mar 19.
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High-resolution DNA-binding specificity analysis of yeast transcription factors.酵母转录因子的高分辨率DNA结合特异性分析
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A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters.一个酵母转录因子基序文库揭示了Rsc3在靶向启动子处核小体排除方面的广泛功能。
Mol Cell. 2008 Dec 26;32(6):878-87. doi: 10.1016/j.molcel.2008.11.020.
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Corra: Computational framework and tools for LC-MS discovery and targeted mass spectrometry-based proteomics.科拉:用于液相色谱-质谱联用发现和基于靶向质谱的蛋白质组学的计算框架及工具。
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Yeast life span extension by depletion of 60s ribosomal subunits is mediated by Gcn4.通过消耗60S核糖体亚基来延长酵母寿命是由Gcn4介导的。
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