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用于分子建模的氢键强度理论预测。

Theoretical prediction of hydrogen bond strength for use in molecular modeling.

作者信息

Nocker Monika, Handschuh Sandra, Tautermann Christofer, Liedl Klaus R

机构信息

Theoretical Chemistry, Center of Molecular Biosciences, Faculty of Chemistry and Pharmacy, University of Innsbruck, Innrain52a, A-6020 Innsbruck, Austria.

出版信息

J Chem Inf Model. 2009 Sep;49(9):2067-76. doi: 10.1021/ci9001469.

Abstract

Hybrid density functional theory calculations are used to investigate the strength of hydrogen bonds of structurally different molecules in complex with a standard donor and acceptor in vacuo. B3LYP/aug-cc-pVDZ calculations with one angle constraint lead to excellent correlations with experimental data (R(2) = 0.94, s(y) = 0.45 for acceptors and R(2) = 0.77, s(y) = 0.88 for donors). Substitutions of aromatic systems by electron donating and -withdrawing groups show a reinforcement of the interaction when substituting an acceptor with electron donating groups and weakening by substitution with electron withdrawing groups. For donor systems the opposite effect can be observed. Drug design of novel ligands will be able to profit from the predictive power of the method established, as hydrogen bonds between receptor and drug molecules are an important criterion for binding affinities.

摘要

采用杂化密度泛函理论计算方法,研究了真空中结构不同的分子与标准供体和受体形成复合物时氢键的强度。带有一个角度约束的B3LYP/aug-cc-pVDZ计算结果与实验数据具有良好的相关性(受体的R(2) = 0.94,s(y) = 0.45;供体的R(2) = 0.77,s(y) = 0.88)。用供电子基团和吸电子基团取代芳香体系时,用供电子基团取代受体可增强相互作用,而用吸电子基团取代则减弱相互作用。对于供体体系,可观察到相反的效果。由于受体与药物分子之间的氢键是结合亲和力的重要标准,新型配体的药物设计将能够从所建立方法的预测能力中受益。

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